Add DRAGEN Array CLI

dragena/container.yaml

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+# fake path for locally built container
+path: dragena.sif
+url: https://help.dragenarray.illumina.com/
+maintainer: "@jterstriep"
+
+description: "DRAGEN (Dynamic Read Analysis for GENomics) Array secondary analysis is a powerful bioinformatics software for Illumina Infinium array-based assays. DRAGEN Array uses cutting-edge data analysis tools to provide accurate, comprehensive, and highly efficient secondary analysis to maximize genomic insights and meet your research needs across multiple applications."
+
+
+# fake hashes for locally built container
+latest:
+  "1.1.0": sha256:caae00cea035b1aba1a9a38e39cecf2ecc7f6ba443187204b405302645e7cac1
+tags:
+  "1.1.0": sha256:caae00cea035b1aba1a9a38e39cecf2ecc7f6ba443187204b405302645e7cac1
+
+aliases:
+  dragena: /opt/dragena/dragena
+  createdump: /opt/dragena/createdump

dragena/dragena.def

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+Bootstrap: docker
+From: ubuntu:22.04
+
+%files
+    ${DRAGENA_TAR} /dragena.tar.gz
+
+%post
+    if [ ! -f /dragena.tar.gz ]; then
+        echo Tar file not found, set \$DRAGENA_TAR prior to singularity build
+        exit 1
+    fi
+
+    apt-get update && apt-get install -y libicu70
+
+    cd /opt
+    TOPDIR=$(tar tvzf /dragena.tar.gz | head -1 | cut -d' ' -f6)
+    tar -xzf /dragena.tar.gz --strip-components=1 $TOPDIR
+
+    rm /dragena.tar.gz
+
+
+%environment
+    export PATH=/opt/dragena:$PATH
+
+%runscript
+    /opt/dragena/dragena
+
+%labels
+    Author: Jeff Terstriep

dragena/readme.md

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+The dragena tar file must be specified using the environmental variable DRAGENA_TAR 
+during the singularity build command. 
+
+```bash
+export DRAGENA_TAR=/usr/apps/install_files/dragena-linux-x64-DAv1.1.0-rc3.tar.gz 
+singularity build dragena.sif dragena.def
+```
+
+- The def file untars the files into /opt/dragena 
+- /opt/dragena is added to the PATH.
+- The executable is located at /opt/dragena/dragena.
+- The top level directory from the tar file is stripped.