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Modify container to install MetaScope from bioconductor
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jterstriep committed Jan 17, 2025
1 parent 663808a commit 81f4da7
Showing 1 changed file with 5 additions and 2 deletions.
7 changes: 5 additions & 2 deletions metascope/Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -42,8 +42,11 @@ RUN curl -LO https://github.com/samtools/samtools/releases/download/1.21/samtool
# Install R packages
RUN R -e "install.packages(c('devtools', 'remotes', 'BiocManager', 'R.utils'))" \
&& R -e "BiocManager::install(c('Rsamtools', 'Rbowtie2'))" \
&& R -e "remotes::install_github(c('ropensci/bold', 'ropensci/taxize'))" \
&& R -e "devtools::install_github('wejlab/MetaScope')"
&& R -e "remotes::install_github(c('ropensci/bold', 'ropensci/taxize'))"

RUN R -e "BiocManager::install('MetaScope')"



# Set working directory
WORKDIR /home
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