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Updating GLDS to OSDR
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asaravia-butler authored Nov 8, 2023
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# GeneLab bioinformatics processing pipeline for Illumina amplicon sequencing data

> **The document [`GL-DPPD-7104-A.md`](Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-A.md) holds an overview and example commands for how GeneLab processes Illumina amplicon sequencing datasets. See the [Repository Links](#repository-links) descriptions below for more information. Processed data output files and processing code are provided for each GLDS dataset in the [GeneLab Data Systems (GLDS) repository](https://genelab-data.ndc.nasa.gov/genelab/projects).**
> **The document [`GL-DPPD-7104-A.md`](Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-A.md) holds an overview and example commands for how GeneLab processes Illumina amplicon sequencing datasets. See the [Repository Links](#repository-links) descriptions below for more information. Processed data output files and processing code are provided for each GLDS dataset in the [Open Science Data Repository (OSDR)](https://osdr.nasa.gov/bio/repo/).**
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> Note: The exact processing commands and AmpIllumina version used for specific GLDS datasets can be found in the *_processing_info.tar file under "Study Files" for each respective GLDS dataset in the [GLDS repository](https://genelab-data.ndc.nasa.gov/genelab/projects).
> Note: The exact processing commands and AmpIllumina version used for specific GLDS datasets can be found in the *_processing_info.tar file under "Files" for each respective GLDS dataset in the [Open Science Data Repository (OSDR)](https://osdr.nasa.gov/bio/repo/).
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* [**GLDS_Processing_Scripts**](GLDS_Processing_Scripts)

- Contains the exact processing commands and AmpIllumina version used for select GLDS datasets that have been released and are available in the [GeneLab Data Systems (GLDS) repository](https://genelab-data.ndc.nasa.gov/genelab/projects)
> Note: Exact processing commands and AmpIllumina version used for datasets not available in this sub-directory can be found in the *_processing_info.tar file under "Study Files" for each respective GLDS dataset in the [GLDS repository](https://genelab-data.ndc.nasa.gov/genelab/projects).
- Contains the exact processing commands and AmpIllumina version used for select GLDS datasets that have been released and are available in the [Open Science Data Repository (OSDR)](https://osdr.nasa.gov/bio/repo/)
> Note: Exact processing commands and AmpIllumina version used for datasets not available in this sub-directory can be found in the *_processing_info.tar file under "Files" for each respective GLDS dataset in the [Open Science Data Repository (OSDR)](https://osdr.nasa.gov/bio/repo/).
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