Releases: monarch-initiative/monarch-app
Releases · monarch-initiative/monarch-app
v1.0.0
What's Changed
- Skip delete SSH keys when none are present by @glass-ships in #540
- Ff pheno fix by @vincerubinetti in #543
- update PFR page by @glass-ships in #561
- fix download=false still downloading by @glass-ships in #563
- Increase grounding precision by @kevinschaper in #565
- add subj/obj taxon, category, namespace to assoc api endpoint by @glass-ships in #548
- Add google group button by @glass-ships in #573
- Add button to run Text Annotator by @glass-ships in #569
- handle inconsistent annotations by @madanucd in #574
- back merge soft-break message into main by @kevinschaper in #580
- 554 coverage by @amc-corey-cox in #582
- fix entity overlap by @madanucd in #584
- Test coverage by @amc-corey-cox in #583
- add color to category icons by @vincerubinetti in #545
- Fixes how we do OR expansion of filter queries based on lists by @kevinschaper in #585
- fix tally in set to set compare func by @vincerubinetti in #590
- Update checkout action by @glass-ships in #592
- Improve pheno explorer examples by @amc-corey-cox in #596
- Add workflow to upload coverage for main by @amc-corey-cox in #598
- has_phenotype expansion in node schema, semsim autocomplete and boosting tweaks by @kevinschaper in #581
New Contributors
- @amc-corey-cox made their first contribution in #582
Full Changelog: v0.20.0...v1.0.0
v0.20.2
Updates link to V2/Biolink API in Fastapi description
v0.20.1
Full Changelog: v0.20.0...v0.20.1
What's Changed
- add soft break message to api description by @kevinschaper in #579
Full Changelog: v0.20.0...v0.20.1
v0.20.0
What's Changed
- Update PageAbout.vue by @glass-ships in #526
- exclude multi-entity association endpoint from api by @glass-ships in #527
- Fix semsim search GET api method, add api tests by @kevinschaper in #529
- Updating to Pydantic v2 by @glass-ships in #495
- add qualifier fields by @kevinschaper in #533
- Update PFR page by @glass-ships in #534
- Update test for changed data by @kevinschaper in #535
- TSV for Downloads by @glass-ships in #530
- add associations tsv download to frontend by @vincerubinetti in #537
- Text annotation v3 by @madanucd in #522
- show phenotype in pheno sem sim group by @vincerubinetti in #538
New Contributors
Full Changelog: v0.19.2...v0.20.0
v0.19.2
What's Changed
- Fixes searches where no category is specified by @kevinschaper in #520
Full Changelog: v0.19.1...v0.19.2
v0.19.1
What's Changed
- Turns text annotator off again in the UI by @kevinschaper in #518
Full Changelog: v0.19.0...v0.19.1
v0.19.0
What's Changed
- Add Resources (Bang Our Own Drum) by @glass-ships in #463
- add blurb to resources page by @glass-ships in #485
- update resource fixture by @glass-ships in #488
- Fixed text that links to HPO by @nlharris in #455
- Update PFR page by @glass-ships in #492
- add ssh cache and key expiration for deployment workflow by @glass-ships in #491
- Simplify loading of converter in CurieService by @cthoyt in #486
- add send to pheno ex button, obsolete node, misc by @vincerubinetti in #482
- update publications (and makefile/script slightly) by @glass-ships in #493
- Updating Teams Page again by @glass-ships in #487
- Implement SemsimServer search by @glass-ships in #499
- Quick fixes for semsim search / API config by @kevinschaper in #503
- Populate uri for entities when extra=True by @kevinschaper in #502
- Adds a full entity to the semsim search response by @kevinschaper in #504
- Reduce limit on phenotype fetching to the 500 record max by @kevinschaper in #509
- Bring back oak and phenio (text annotator) by @vincerubinetti in #497
- Pass the phenio db path to the oak implementation initializer by @kevinschaper in #510
- remove old ssh keys in action by @glass-ships in #511
- Improve association table search by @kevinschaper in #268
- Replace CuriesService with direct usage of
curies.Converter
by @cthoyt in #494 - Quick PR to turn off oak init and hide the text annotator endpoints so that we can start up on GCP again. by @kevinschaper in #512
- generate category enums by solr query by @glass-ships in #515
- Semantic Search UI by @kevinschaper in #514
- Fixes specifying categories on the search endpoint by @kevinschaper in #517
New Contributors
Full Changelog: v0.18.1...v0.19.0
v0.18.1
v0.18.0
What's Changed
- Remove association summary on node pages by @glass-ships in #441
- Add (minimal) sssom mapping class and association grouping key to schema by @kevinschaper in #435
- Revert "Add (minimal) sssom mapping class and association grouping key to schema" by @kevinschaper in #454
- add URI to entity by @glass-ships in #460
- update Phenomics First page by @glass-ships in #423
- Schema support for SSSOM Mappings and association grouping_key column by @kevinschaper in #461
- Make autocomplete go directly to entity by @vincerubinetti in #458
- Adds q.op=AND to Solr queries so that boolean syntax will work by @kevinschaper in #459
- Add mapping endpoint to serve mapping rows by @kevinschaper in #466
- Convert new phenogrid to svg by @vincerubinetti in #468
- Add closurizer expansion slots for qualifiers field by @kevinschaper in #453
- Add deprecated slot, down rank deprecated search results by @kevinschaper in #474
- docker prune before updating services by @glass-ships in #480
Full Changelog: v0.17.11...v0.18.0
v0.17.11
What's Changed
- Change disease mode of inheritance query to only look at direct associations by @kevinschaper in #432
Full Changelog: v0.17.10...v0.17.11