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Create MIC Repository from cookiecutter-monarch-ingest #933

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Tracked by #884
amc-corey-cox opened this issue Jan 6, 2025 · 0 comments
Open
Tracked by #884

Create MIC Repository from cookiecutter-monarch-ingest #933

amc-corey-cox opened this issue Jan 6, 2025 · 0 comments
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backend enhancement New feature or request

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@amc-corey-cox
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amc-corey-cox commented Jan 6, 2025

We need to create a new ingest for the Monarch KG for the Micronutrient Information Center.
https://lpi.oregonstate.edu/mic/

We'll use the cookiecutter-monarch-ingest as a base for the repo and bring in the other elements that are specially to this ingest, i.e. using ontogpt to extract from the website. Otherwise, we want to try to make this as standard an ingest repo as is reasonable.

We want to extract from this site using ontogpt, then feed that output into a koza ingest, making sure that we assign publications to the associations. @caufieldjh has a template in place with this PR monarch-initiative/ontogpt#495.

We can use this sitemap as our list of pages
mic_pages.txt

(generated using npx sitemap-generator-cli https://lpi.oregonstate.edu/mic/ and some grep/sed that I'm too embarrassed to repeat)

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