Add Huggingface Integration #3464
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: CI-PyTest | |
| on: | |
| push: | |
| branches: [master] | |
| pull_request: {} | |
| jobs: | |
| full-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Free space | |
| run: | | |
| df -h | |
| sudo rm -rf /opt/ghc | |
| sudo rm -rf "/usr/local/share/boost" | |
| sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| sudo rm -rf "$ANDROID_SDK_ROOT" | |
| df -h | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| # Use changed-files-specific action to collect file changes. | |
| # The following commented condition applied to a step will run that step only if non-docs files have changed. | |
| # It should be applied to all functionality-related steps. | |
| # if: steps.changed-files-specific.outputs.only_modified == 'false' | |
| - name: Detect and screen file changes | |
| id: changed-files-specific | |
| uses: tj-actions/changed-files@v41 | |
| with: | |
| files: | | |
| .github/*.md | |
| .github/ISSUE_TEMPLATE/*.md | |
| .github/workflows/devcontainer.yml | |
| .github/workflows/docker-image.yml | |
| .devcontainer/** | |
| docs/** | |
| mlcube/** | |
| *.md | |
| LICENSE | |
| Dockerfile-* | |
| - name: Summarize docs and non-docs modifications | |
| run: | | |
| echo "List of docs files that have changed: ${{ steps.changed-files-specific.outputs.all_modified_files }}" | |
| echo "Changed non-docs files: ${{ steps.changed-files-specific.outputs.other_modified_files }}" | |
| # This second step is unnecessary but highly recommended because | |
| # It will cache database and saves time re-downloading it if database isn't stale. | |
| - name: Cache pip | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/setup.py') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Set up Python 3.9 | |
| if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install dependencies and package | |
| if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libvips libvips-tools -y | |
| python -m pip install --upgrade pip==24.0 | |
| python -m pip install wheel | |
| python -m pip install openvino-dev==2023.0.1 mlcube_docker | |
| pip install torch==2.3.1 torchvision==0.18.1 torchaudio==2.3.1 --index-url https://download.pytorch.org/whl/cpu | |
| pip install -e . | |
| - name: Run generic unit tests | |
| if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml -k "generic" | |
| - name: Run classification unit tests with histology | |
| if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "classification and histology" | |
| - name: Run classification unit tests | |
| if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "classification and not histology" | |
| - name: Run segmentation unit tests | |
| if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "segmentation and not transunet" | |
| - name: Run regression unit tests | |
| if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "regression" | |
| - name: Run transunet unit tests | |
| if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "transunet" | |
| - name: Run entrypoints tests | |
| if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "entrypoints" | |
| - name: Run test for update_version | |
| if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "update_version" | |
| - name: Upload coverage to CodeCov | |
| if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml | |
| flags: unittests | |
| - name: Upload coverage to Codacy | |
| if: github.ref == 'refs/heads/master' # only run when on master | |
| uses: codacy/[email protected] | |
| with: | |
| project-token: ${{ secrets.CODACY_PROJECT_TOKEN }} | |
| coverage-reports: ./coverage.xml |