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Add Huggingface Integration #3464

Add Huggingface Integration

Add Huggingface Integration #3464

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: CI-PyTest
on:
push:
branches: [master]
pull_request: {}
jobs:
full-test:
runs-on: ubuntu-latest
steps:
- name: Free space
run: |
df -h
sudo rm -rf /opt/ghc
sudo rm -rf "/usr/local/share/boost"
sudo rm -rf "$AGENT_TOOLSDIRECTORY"
sudo rm -rf "$ANDROID_SDK_ROOT"
df -h
- name: Checkout
uses: actions/checkout@v3
# Use changed-files-specific action to collect file changes.
# The following commented condition applied to a step will run that step only if non-docs files have changed.
# It should be applied to all functionality-related steps.
# if: steps.changed-files-specific.outputs.only_modified == 'false'
- name: Detect and screen file changes
id: changed-files-specific
uses: tj-actions/changed-files@v41
with:
files: |
.github/*.md
.github/ISSUE_TEMPLATE/*.md
.github/workflows/devcontainer.yml
.github/workflows/docker-image.yml
.devcontainer/**
docs/**
mlcube/**
*.md
LICENSE
Dockerfile-*
- name: Summarize docs and non-docs modifications
run: |
echo "List of docs files that have changed: ${{ steps.changed-files-specific.outputs.all_modified_files }}"
echo "Changed non-docs files: ${{ steps.changed-files-specific.outputs.other_modified_files }}"
# This second step is unnecessary but highly recommended because
# It will cache database and saves time re-downloading it if database isn't stale.
- name: Cache pip
uses: actions/cache@v3
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/setup.py') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Set up Python 3.9
if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
uses: actions/setup-python@v4
with:
python-version: 3.9
- name: Install dependencies and package
if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
run: |
sudo apt-get update
sudo apt-get install libvips libvips-tools -y
python -m pip install --upgrade pip==24.0
python -m pip install wheel
python -m pip install openvino-dev==2023.0.1 mlcube_docker
pip install torch==2.3.1 torchvision==0.18.1 torchaudio==2.3.1 --index-url https://download.pytorch.org/whl/cpu
pip install -e .
- name: Run generic unit tests
if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
run: |
pytest --cov=. --cov-report=xml -k "generic"
- name: Run classification unit tests with histology
if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
run: |
pytest --cov=. --cov-report=xml --cov-append -k "classification and histology"
- name: Run classification unit tests
if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
run: |
pytest --cov=. --cov-report=xml --cov-append -k "classification and not histology"
- name: Run segmentation unit tests
if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
run: |
pytest --cov=. --cov-report=xml --cov-append -k "segmentation and not transunet"
- name: Run regression unit tests
if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
run: |
pytest --cov=. --cov-report=xml --cov-append -k "regression"
- name: Run transunet unit tests
if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
run: |
pytest --cov=. --cov-report=xml --cov-append -k "transunet"
- name: Run entrypoints tests
if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
run: |
pytest --cov=. --cov-report=xml --cov-append -k "entrypoints"
- name: Run test for update_version
if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
run: |
pytest --cov=. --cov-report=xml --cov-append -k "update_version"
- name: Upload coverage to CodeCov
if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
uses: codecov/codecov-action@v1
with:
token: ${{ secrets.CODECOV_TOKEN }}
file: ./coverage.xml
flags: unittests
- name: Upload coverage to Codacy
if: github.ref == 'refs/heads/master' # only run when on master
uses: codacy/[email protected]
with:
project-token: ${{ secrets.CODACY_PROJECT_TOKEN }}
coverage-reports: ./coverage.xml