10.7.0

nmdc_schema/migrators/migrator_from_10_6_0_to_10_7_0.py

@@ -0,0 +1,17 @@
+from nmdc_schema.migrators.migrator_base import MigratorBase
+
+
+class Migrator(MigratorBase):
+    r"""
+    Migrates a database between two schemas.
+
+    Note: This is a "no op" migrator. Its existence serves as documentation that no
+          database migration is necessary between the specified schema versions.
+    """
+
+    _from_version = "10.6.0"
+    _to_version = "10.7.0"
+
+    def upgrade(self) -> None:
+        r"""Do nothing."""
+        pass

nmdc_schema/nmdc.py

@@ -1,5 +1,5 @@
 # Auto generated from nmdc.yaml by pythongen.py version: 0.0.1
-# Generation date: 2024-07-19T10:42:33
+# Generation date: 2024-07-24T13:21:38
 # Schema: NMDC
 #
 # id: https://w3id.org/nmdc/nmdc
@@ -6377,6 +6377,10 @@ def _addvals(cls):
             PermissibleValue(
                 text="rRNA Filtered Sequencing Reads",
                 description="File containing ribosomal reads from the read qc filtering step."))
+        setattr(cls, "BAI File",
+            PermissibleValue(
+                text="BAI File",
+                description="""An index file found in the same directory as the binary alignment map (BAM) file, a compressed binary version of a sequence alignment/map (SAM) file."""))
 
 class CreditEnum(EnumDefinitionImpl):
 

nmdc_schema/nmdc.schema.json

@@ -4482,7 +4482,8 @@
                 "Metatranscriptome Expression",
                 "Metatranscriptome Expression Intergenic",
                 "Metatranscriptome Expression Info File",
-                "rRNA Filtered Sequencing Reads"
+                "rRNA Filtered Sequencing Reads",
+                "BAI File"
             ],
             "title": "FileTypeEnum",
             "type": "string"

nmdc_schema/nmdc_materialized_patterns.schema.json

@@ -4494,7 +4494,8 @@
                 "Metatranscriptome Expression",
                 "Metatranscriptome Expression Intergenic",
                 "Metatranscriptome Expression Info File",
-                "rRNA Filtered Sequencing Reads"
+                "rRNA Filtered Sequencing Reads",
+                "BAI File"
             ],
             "title": "FileTypeEnum",
             "type": "string"