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update invalid study file for database root class
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,68 +1,27 @@ | ||
id: nmdc:sty-11-ab | ||
name: see also description, title, objective, various alternatives | ||
abstract: This study is about a thing. | ||
description: see also name, title, objective, various alternatives | ||
alternative_identifiers: | ||
- generic:abc1 | ||
related_identifiers: any string R1 | ||
#emsl_proposal_identifier: | ||
# - generic:abc1 | ||
#emsl_proposal_doi: any string | ||
gold_study_identifiers: | ||
- GOLD:Gs12345 | ||
- GOLD:Gs90909 | ||
mgnify_project_identifiers: | ||
- mgnify.proj:ABC123 | ||
ecosystem: unconstrained text. should be validated against the controlled vocabulary, | ||
by the sample's environmental package. would also be nice to align the CV with MIxS | ||
environmental triads | ||
ecosystem_category: unconstrained text | ||
ecosystem_type: unconstrained text | ||
ecosystem_subtype: unconstrained text | ||
specific_ecosystem: unconstrained text | ||
principal_investigator: | ||
has_raw_value: Craig Venter | ||
was_generated_by: nmdc:any_string_1 | ||
orcid: ORCID:0000-0002-7086-765X | ||
profile_image_url: https://en.wikipedia.org/wiki/Craig_Venter#/media/File:Craigventer2.jpg | ||
email: [email protected] | ||
name: J. Craig Venter | ||
websites: | ||
- https://www.jcvi.org/ | ||
- https://www.jcvi.org/about/j-craig-venter | ||
title: Sample Exhaustive Biosample instance. Although all of these values should pass | ||
validation, that does not mean that any Biosample of any type would necessarily | ||
have this particular combination of values. | ||
alternative_titles: | ||
- any string 1 | ||
- any string 2 | ||
alternative_descriptions: | ||
- any string 1 | ||
- any string 2 | ||
alternative_names: | ||
- any string 1 | ||
- any string 2 | ||
objective: This record, an instance of class Study from the nmdc-schema was had authored, | ||
so that the NMDC team would have at least one instance, using all slots, with a | ||
mixture of reasonable values and minimally compliant values. | ||
websites: | ||
- https://w3id.org/nmdc | ||
- https://w3id.org/linkml | ||
publications: | ||
- any string 1 | ||
- any string 2 | ||
ess_dive_datasets: | ||
- any string 1 | ||
- any string 2 | ||
type: any string | ||
relevant_protocols: | ||
- any string 1 | ||
- any string 2 | ||
funding_sources: | ||
- any string 1 | ||
- any string 2 | ||
has_credit_associations: | ||
- applies_to_person: | ||
study_set: | ||
- id: nmdc:sty-11-ab | ||
name: see also description, title, objective, various alternatives | ||
abstract: This study is about a thing. | ||
description: see also name, title, objective, various alternatives | ||
alternative_identifiers: | ||
- generic:abc1 | ||
related_identifiers: any string R1 | ||
#emsl_proposal_identifier: | ||
# - generic:abc1 | ||
#emsl_proposal_doi: any string | ||
gold_study_identifiers: | ||
- GOLD:Gs12345 | ||
- GOLD:Gs90909 | ||
mgnify_project_identifiers: | ||
- mgnify.proj:ABC123 | ||
ecosystem: unconstrained text. should be validated against the controlled vocabulary, | ||
by the sample's environmental package. would also be nice to align the CV with MIxS | ||
environmental triads | ||
ecosystem_category: unconstrained text | ||
ecosystem_type: unconstrained text | ||
ecosystem_subtype: unconstrained text | ||
specific_ecosystem: unconstrained text | ||
principal_investigator: | ||
has_raw_value: Craig Venter | ||
was_generated_by: nmdc:any_string_1 | ||
orcid: ORCID:0000-0002-7086-765X | ||
|
@@ -72,13 +31,55 @@ has_credit_associations: | |
websites: | ||
- https://www.jcvi.org/ | ||
- https://www.jcvi.org/about/j-craig-venter | ||
applied_roles: | ||
- Supervision | ||
- Conceptualization | ||
applied_role: Funding acquisition | ||
title: Sample Exhaustive Biosample instance. Although all of these values should pass | ||
validation, that does not mean that any Biosample of any type would necessarily | ||
have this particular combination of values. | ||
alternative_titles: | ||
- any string 1 | ||
- any string 2 | ||
alternative_descriptions: | ||
- any string 1 | ||
- any string 2 | ||
alternative_names: | ||
- any string 1 | ||
- any string 2 | ||
objective: This record, an instance of class Study from the nmdc-schema was had authored, | ||
so that the NMDC team would have at least one instance, using all slots, with a | ||
mixture of reasonable values and minimally compliant values. | ||
websites: | ||
- https://w3id.org/nmdc | ||
- https://w3id.org/linkml | ||
publications: | ||
- any string 1 | ||
- any string 2 | ||
ess_dive_datasets: | ||
- any string 1 | ||
- any string 2 | ||
type: any string | ||
- applies_to_person: | ||
name: Tanja Davidsen | ||
applied_roles: | ||
- Investigation | ||
- Supervision | ||
relevant_protocols: | ||
- any string 1 | ||
- any string 2 | ||
funding_sources: | ||
- any string 1 | ||
- any string 2 | ||
has_credit_associations: | ||
- applies_to_person: | ||
has_raw_value: Craig Venter | ||
was_generated_by: nmdc:any_string_1 | ||
orcid: ORCID:0000-0002-7086-765X | ||
profile_image_url: https://en.wikipedia.org/wiki/Craig_Venter#/media/File:Craigventer2.jpg | ||
email: [email protected] | ||
name: J. Craig Venter | ||
websites: | ||
- https://www.jcvi.org/ | ||
- https://www.jcvi.org/about/j-craig-venter | ||
applied_roles: | ||
- Supervision | ||
- Conceptualization | ||
applied_role: Funding acquisition | ||
type: any string | ||
- applies_to_person: | ||
name: Tanja Davidsen | ||
applied_roles: | ||
- Investigation | ||
- Supervision |