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Handle exceptions when calculating missing/extra commands in Configur… #248

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Job	Run time
lint (3.10)	10s
test (v3.7.8)	1m 20s
lint (3.11)	10s
test (v4.0.7)	2m 7s
lint (3.12)	8s
test (v4.1.1)	2m 5s
	6m 0s