StarCluster-Plugins

Collection of plugins to build a NGS AWS analysis system based on a MIT Starcluster base image.

Name		Name	Last commit message	Last commit date
Latest commit History 79 Commits
BWA_0_7_10.py		BWA_0_7_10.py
FusionAnnotator_0_0_2.py		FusionAnnotator_0_0_2.py
FusionAnnotator_0_0_2.pyc		FusionAnnotator_0_0_2.pyc
LICENSE		LICENSE
MetaSV_0_3.py		MetaSV_0_3.py
MetaSV_0_3.pyc		MetaSV_0_3.pyc
Picard_1_121.py		Picard_1_121.py
PyVCF_0_6.py		PyVCF_0_6.py
PyVCF_0_6.pyc		PyVCF_0_6.pyc
Pysam_0_8_1.pyc		Pysam_0_8_1.pyc
Pysam_0_8_4.py		Pysam_0_8_4.py
README.md		README.md
RVboost_0_1.py		RVboost_0_1.py
RVboost_0_1.pyc		RVboost_0_1.pyc
R_3_1_1.py		R_3_1_1.py
R_3_2_2.py		R_3_2_2.py
R_3_2_2.pyc		R_3_2_2.pyc
STARFUSION_0_3_1.py		STARFUSION_0_3_1.py
STARFUSION_0_5_4.py		STARFUSION_0_5_4.py
STARFUSION_0_8.py		STARFUSION_0_8.py
STARFUSION_1_1_0.py		STARFUSION_1_1_0.py
STAR_2_4_0d.py		STAR_2_4_0d.py
STAR_2_4_0e.py		STAR_2_4_0e.py
STAR_2_4_0f1.py		STAR_2_4_0f1.py
STAR_2_4_0g.py		STAR_2_4_0g.py
STAR_2_4_0g1.py		STAR_2_4_0g1.py
STAR_2_4_2a.py		STAR_2_4_2a.py
VCFTools_0_1_12b.py		VCFTools_0_1_12b.py
VEP_82.py		VEP_82.py
VEP_82.pyc		VEP_82.pyc
abra_0_9_4.py		abra_0_9_4.py
abra_0_9_4.pyc		abra_0_9_4.pyc
age_0_4.py		age_0_4.py
age_0_4.pyc		age_0_4.pyc
art_03_19_2-15.py		art_03_19_2-15.py
art_03_19_2015.py		art_03_19_2015.py
bbmap_33_73b.py		bbmap_33_73b.py
bbmap_34_46.py		bbmap_34_46.py
bcftools_1_3.py		bcftools_1_3.py
bcftools_1_3.pyc		bcftools_1_3.pyc
bedtools_2_21.py		bedtools_2_21.py
bowtie_1_0_1.py		bowtie_1_0_1.py
bowtie_2_2_3.py		bowtie_2_2_3.py
breakdancer_1_1_2.py		breakdancer_1_1_2.py
breakdancer_1_1_2.pyc		breakdancer_1_1_2.pyc
breakdancer_1_4_5.py		breakdancer_1_4_5.py
breakdancer_1_4_5.pyc		breakdancer_1_4_5.pyc
canvas_1_3_9.py		canvas_1_3_9.py
canvas_1_3_9.pyc		canvas_1_3_9.pyc
cnvnator_0.3.py		cnvnator_0.3.py
cnvnator_0_3.py		cnvnator_0_3.py
cnvnator_0_3_2.py		cnvnator_0_3_2.py
cnvnator_0_3_2.pyc		cnvnator_0_3_2.pyc
controlfreec_7_2.py		controlfreec_7_2.py
cufflinks_2_2_1.py		cufflinks_2_2_1.py
delly_0_5_9.py		delly_0_5_9.py
fake_modules.py		fake_modules.py
fastqc_0_11_2.py		fastqc_0_11_2.py
fermikit_0_13.py		fermikit_0_13.py
freebayes_0_9_21.py		freebayes_0_9_21.py
fusioncatcher_0_99_3c.py		fusioncatcher_0_99_3c.py
gess_1_0.py		gess_1_0.py
gmap_2015_09_29.py		gmap_2015_09_29.py
htseq_0_6_1.py		htseq_0_6_1.py
intogen_2_4_1.py		intogen_2_4_1.py
kallisto_0_42_2_1.py		kallisto_0_42_2_1.py
kallisto_dev.py		kallisto_dev.py
miso_0_5_3.py		miso_0_5_3.py
module_config.py		module_config.py
mojo_0_0_5.py		mojo_0_0_5.py
omicspipe.py		omicspipe.py
omicspipe_config.py		omicspipe_config.py
omicspipe_config_prebuilt.py		omicspipe_config_prebuilt.py
on_boot.py		on_boot.py
on_boot.py.orig		on_boot.py.orig
oncofuse_1_0_6.py		oncofuse_1_0_6.py
oncofuse_1_0_9.py		oncofuse_1_0_9.py
pindel_0_2_0.py		pindel_0_2_0.py
pindel_0_2_0.pyc		pindel_0_2_0.pyc
pindel_0_2_5b6.py		pindel_0_2_5b6.py
pindel_0_2_5b6.pyc		pindel_0_2_5b6.pyc
qc3_1_22.py		qc3_1_22.py
qorts_0_3_17.py		qorts_0_3_17.py
qualimap_2_0.py		qualimap_2_0.py
qualimap_2_1_1.py		qualimap_2_1_1.py
r_packages_config.py		r_packages_config.py
rnaseqc_1_1_8.py		rnaseqc_1_1_8.py
root_6_04_14.py		root_6_04_14.py
root_6_04_14.pyc		root_6_04_14.pyc
rseqc_2_3_9.py		rseqc_2_3_9.py
salmon_0_3_0.py		salmon_0_3_0.py
sambamba_0_4_7.py		sambamba_0_4_7.py
sambamba_0_5_6.py		sambamba_0_5_6.py
sambamba_0_6_0.py		sambamba_0_6_0.py
sambamba_0_6_0.pyc		sambamba_0_6_0.pyc
sambamba_0_6_3.py		sambamba_0_6_3.py
samblaster_0_1_20.py		samblaster_0_1_20.py
samtools_0_1_19.py		samtools_0_1_19.py
samtools_1_1.py		samtools_1_1.py
samtools_1_2.py		samtools_1_2.py

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