improve echo

mattilalab · Jan 24, 2022 · b948334 · b948334
1 parent 9be988d
commit b948334
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/functions/chi2.sh b/functions/chi2.sh
@@ -3,7 +3,7 @@
 # Calculate background for each protein pair (Prot 1 -> Prot 2) after our filtering
 calc_back_final() {
 local PROTCHI="${1}"
-echo "$PROTCHI"
+echo -e "[CHI SQUARE] ${PROTCHI%.*.*}"
 
 cat $PROTCHI | while read -r Seq1 Seq2 numPairs totalComp ; do
   back_calc=$(printf "%1.10f" `echo "($numPairs)/($totalComp)" |bc -l`)

diff --git a/functions/results.sh b/functions/results.sh
@@ -105,7 +105,7 @@ results_cleanup() {
 
   # "Forward" Protein A vs Protein B
   cp ${PROTEINONE%.*}.fa_${PROTEINTWO%.*}.fa.out ${PROTEINONE%.*}_${PROTEINTWO%.*}.clean
-  echo "Clean up ${PROTEINONE%.*}_${PROTEINTWO%.*}.out"
+  echo -e "[CLEANINGUP] ${PROTEINONE%.*}_${PROTEINTWO%.*}.out"
   sed -i -n '/Coevolving Pairs of amino acid sites/,/Overlapping groups of coevolving residues/p' ${PROTEINONE%.*}_${PROTEINTWO%.*}.clean
   sed -i '1,5d' ${PROTEINONE%.*}_${PROTEINTWO%.*}.clean
   sed -i 's/Overlapping groups of coevolving residues//' ${PROTEINONE%.*}_${PROTEINTWO%.*}.clean
@@ -121,7 +121,7 @@ results_cleanup() {
 
   # "Reverse" Protein B vs Protein A
   cp ${PROTEINTWO%.*}.fa_${PROTEINONE%.*}.fa.out ${PROTEINTWO%.*}_${PROTEINONE%.*}.clean
-  echo "Clean up ${PROTEINTWO%.*}_${PROTEINONE%.*}.out"
+  echo "[CLEANINGUP] ${PROTEINTWO%.*}_${PROTEINONE%.*}.out"
   sed -i -n '/Coevolving Pairs of amino acid sites/,/Overlapping groups of coevolving residues/p' ${PROTEINTWO%.*}_${PROTEINONE%.*}.clean
   sed -i '1,5d' ${PROTEINTWO%.*}_${PROTEINONE%.*}.clean
   sed -i 's/Overlapping groups of coevolving residues//' ${PROTEINTWO%.*}_${PROTEINONE%.*}.clean
@@ -374,7 +374,7 @@ protein_pairs_stats() {
 
     # Collect data in a single file, which can be imported in Cytoscape
     echo "$msa_1 $msa_2 $coevThr $averR $averSigR $totCompar $sitesCountA $sitesCountB $gblocksMIN $gblocksMAX $gblocksMEAN $GapsMIN $GapsMAX $GapsMEAN $DivsMIN $DivsMAX $DivsMEAN $cCoevMIN $cCoevMAX $cCoevMEAN $bootMIN $bootMAX $bootMEAN $pMeanMIN $pMeanMAX $pMeanMEAN $BonferroniMIN $BonferroniMAX $BonferroniMEAN $chiboth_fin" >> $EOUT
-    echo "${msa_1} ${msa_2} added"
+    echo -e "[COEVOL ADD] ${msa_1} ${msa_2}"
 
     cd ..