DM-46563: Ensure that arrow tables with null values return masked numpy array #5967
Workflow file for this run
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| name: build_and_test | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "*" | |
| pull_request: | |
| jobs: | |
| build_and_test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| # Need to clone everything for the git tags. | |
| fetch-depth: 0 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge,defaults | |
| channel-priority: strict | |
| show-channel-urls: true | |
| miniforge-variant: Mambaforge | |
| use-mamba: true | |
| - name: Update pip/wheel infrastructure | |
| shell: bash -l {0} | |
| run: | | |
| mamba install -y -q pip wheel | |
| - name: Install sqlite | |
| shell: bash -l {0} | |
| run: | | |
| mamba install -y -q sqlite | |
| # Postgres-14 is already installed from official postgres repo, but we | |
| # also need pgsphere which is not installed. The repo is not in the list, | |
| # so we need to re-add it first. | |
| - name: Install postgresql (server) | |
| run: | | |
| sudo sh -c \ | |
| 'echo "deb http://apt.postgresql.org/pub/repos/apt $(lsb_release -cs)-pgdg main" > /etc/apt/sources.list.d/pgdg.list' | |
| wget --quiet -O - https://www.postgresql.org/media/keys/ACCC4CF8.asc | sudo apt-key add - | |
| sudo apt-get update | |
| sudo apt-get install postgresql-14 postgresql-14-pgsphere | |
| - name: Install postgresql Python packages | |
| shell: bash -l {0} | |
| run: | | |
| mamba install -y -q psycopg2 | |
| - name: Install cryptography package for moto | |
| shell: bash -l {0} | |
| run: | | |
| mamba install -y -q cryptography | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| pip install uv | |
| uv pip install -r requirements.txt | |
| # We have two cores so we can speed up the testing with xdist | |
| - name: Install pytest packages | |
| shell: bash -l {0} | |
| run: | | |
| mamba install -y -q \ | |
| pytest pytest-xdist pytest-cov | |
| - name: List installed packages | |
| shell: bash -l {0} | |
| run: | | |
| mamba list | |
| pip list -v | |
| - name: Build and install | |
| shell: bash -l {0} | |
| run: | | |
| uv pip install -v --no-deps -e . | |
| - name: Run tests | |
| shell: bash -l {0} | |
| env: | |
| SQLALCHEMY_WARN_20: 1 | |
| run: | | |
| pytest -r a -v -n 3 --cov=lsst.daf.butler --cov=tests --cov-report=xml --cov-report=term --cov-branch | |
| - name: Upload coverage to codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| files: ./coverage.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| pypi: | |
| runs-on: ubuntu-latest | |
| needs: [build_and_test] | |
| # The "not starts with 's'" is meant to catch server release tags in the | |
| # form 'server/x.y.z' | |
| if: startsWith(github.ref, 'refs/tags') && ! startsWith(github.ref, 'refs/tags/s') | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| # Need to clone everything to embed the version. | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install --upgrade setuptools wheel build | |
| - name: Build and create distribution | |
| run: | | |
| python -m build --skip-dependency-check | |
| - name: Upload | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_UPLOADS }} |