Updated gradle, yml, rDNA tests+check #1
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| name: build | |
| on: [push, pull_request, workflow_dispatch] | |
| jobs: | |
| install-dependencies: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Restore System Dependencies Cache | |
| uses: actions/cache@v3 | |
| id: system-deps-cache | |
| with: | |
| path: | | |
| /usr/local/texlive | |
| /usr/local/bin/pandoc | |
| /usr/local/texlive/texmf-var | |
| /usr/local/texlive/tlpkg/texlive.tlpdb | |
| key: ${{ runner.os }}-system-deps-v1 | |
| - name: Install System Dependencies | |
| if: steps.system-deps-cache.outputs.cache-hit != 'true' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y texlive-latex-base texlive-latex-recommended texlive-latex-extra texlive-fonts-recommended texlive-bibtex-extra pandoc pandoc-citeproc | |
| - uses: actions/cache@v3 | |
| id: r-packages-cache | |
| with: | |
| path: | | |
| ~/.cache/R | |
| /usr/local/texlive | |
| /usr/local/bin/pandoc | |
| /usr/local/texlive/texmf-var | |
| key: ${{ runner.os }}-r-${{ hashFiles('**/DESCRIPTION') }}-v1 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 2 | |
| working-directory: rDNA/rDNA | |
| extra-packages: | | |
| any::devtools | |
| any::testthat | |
| any::ggplot2 | |
| any::roxygen2 | |
| any::igraph | |
| any::ggraph | |
| any::askpass | |
| any::cluster | |
| any::sna | |
| any::ggrepel | |
| any::coda | |
| any::MCMCpack | |
| any::tidygraph | |
| any::heatmaply | |
| any::factoextra | |
| any::MASS | |
| any::pbmcapply | |
| Bibliography: | |
| needs: install-dependencies | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - uses: gradle/wrapper-validation-action@v1 | |
| - name: Setup Gradle | |
| uses: gradle/[email protected] | |
| - name: Execute Gradle build for bibliography | |
| run: ./gradlew :bibliography:build | |
| - name: Store artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Bibliography | |
| path: build/bibliography.* | |
| DNA: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: gradle/wrapper-validation-action@v1 | |
| - uses: actions/setup-java@v3 | |
| with: | |
| distribution: temurin | |
| java-version: 11 | |
| cache: gradle | |
| - name: Setup Gradle | |
| uses: gradle/[email protected] | |
| - name: Execute Gradle build for DNA | |
| run: ./gradlew :dna:build | |
| - name: Store artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: DNA | |
| path: build/*.jar | |
| rDNA: | |
| needs: [DNA, install-dependencies] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: gradle/wrapper-validation-action@v1 | |
| - name: Setup Gradle | |
| uses: gradle/[email protected] | |
| - name: Execute Gradle build for rDNA | |
| run: ./gradlew :rDNA:build | |
| - name: Store artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: rDNA | |
| path: build/*.tar.gz | |
| rDNA-check: | |
| runs-on: ${{ matrix.config.os }} | |
| needs: rDNA | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| working-directory: rDNA/rDNA | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| working-directory: rDNA/rDNA | |
| upload-snapshots: true | |
| rDNA-test: | |
| runs-on: ubuntu-latest | |
| needs: [rDNA, install-dependencies] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: gradle/wrapper-validation-action@v1 | |
| - name: Setup Gradle | |
| uses: gradle/[email protected] | |
| - name: Execute Gradle rDNATest Task | |
| run: ./gradlew :rDNA:rDNATest | |
| - name: Store test results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: rDNA-Test-Results | |
| path: build/reports/tests |