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Update glyma.Cheng_Wang_2013.yml
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Finalize corrections
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jd-campbell authored Nov 14, 2024
1 parent 4508f72 commit 0806721
Showing 1 changed file with 24 additions and 9 deletions.
33 changes: 24 additions & 9 deletions Glycine/max/studies/glyma.Cheng_Wang_2013.yml
Original file line number Diff line number Diff line change
Expand Up @@ -2,15 +2,16 @@
scientific_name: Glycine max
gene_symbols: GmIFS1
gene_symbol_long: Isoflavone Synthase 1
gene_model_pub_name: IFS1
gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.07G202300
gene_model_pub_name: EU391460.1
gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.07G202300
confidence: 4
curators:
- Ella Townsend
- Jacqueline Campbell
- Scott Kalberer
- Steven Cannon
comments:
- GmIFS1 is a duplicate of GmIFS2. ### What is meant by "duplicate" here?
- A cytochrome P450 superfamily protein
phenotype_synopsis: Involved in producing soybean isoflavonoids, isoflavonoids
involved in health benefits for soybean consumption, and more importantly,
involved with soybean environmental stress response.
Expand All @@ -31,19 +32,24 @@ references:
- citation: Cheng, Wang, et al., 2013
doi: 10.1371/journal.pone.0054154
pmid: 23342093
- citation: Jung, Yu, et al. 2013
doi: 10.1038/72671
pmid: 10657130
---
scientific_name: Glycine max
gene_symbols: GmIFS2
gene_symbol_long: Isoflavone Synthase 2
gene_model_pub_name: IFS2
gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.13G173500
gene_model_pub_name: EU391493.1
gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.13G173500
confidence: 4
curators:
- Ella Townsend
- Jacqueline Campbell
- Scott Kalberer
- Steven Cannon
comments:
- GmIFS2 is a duplicate of GmISF1. ### What is meant by "duplicate" here?
- A cytochrome P450 superfamily protein
- glyma.Wm82.gnm4.ann1.Glyma.13G173401 is a second equally good match to EU391493, close to the other GmIFS2 gene on chromosome 13
phenotype_synopsis: Involved in producing soybean isoflavonoids, isoflavonoids
involved in health benefits for soybean consumption, and more importantly,
involved with soybean environmental stress response.
Expand All @@ -64,19 +70,25 @@ references:
- citation: Cheng, Wang, et al., 2013
doi: 10.1371/journal.pone.0054154
pmid: 23342093
- citation: Jung, Yu, et al. 2013
doi: 10.1038/72671
pmid: 10657130
---
scientific_name: Glycine max
gene_symbols: GmF3H2
gene_symbol_long: Flavanone 3-Hydroxylase 2
gene_model_pub_name: F3H2
gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.02G048400
gene_model_pub_name: EU391427.1
gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.02G048600
confidence: 4
curators:
- Ella Townsend
- Scott Kalberer
- Jacqueline Campbell
- Steven Cannon
comments:
- A cytochrome P450 superfamily protein
- glyma.Wm82.gnm4.ann1.Glyma.02G048400 is also a very strong match to EU391427
- GmF3H2 is under more selective pressure than GmIFS1 & GmIFS2.
- Only shows GmF3H name and not GmF3H2. ### Not sure what this means?
phenotype_synopsis: Involved in flavone 3-hydroxylase synthase and involved in
environmental stress responses.
traits:
Expand All @@ -96,3 +108,6 @@ references:
- citation: Cheng, Wang, et al., 2013
doi: 10.1371/journal.pone.0054154
pmid: 23342093
- citation: Jung, Yu, et al. 2013
doi: 10.1038/72671
pmid: 10657130

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