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2 changes: 1 addition & 1 deletion .nojekyll
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10 changes: 5 additions & 5 deletions posts/01-welcome/index.html
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Expand Up @@ -251,8 +251,8 @@ <h2 id="toc-title">Table of contents</h2>
<li><a href="#disability-support-service" id="toc-disability-support-service" class="nav-link" data-scroll-target="#disability-support-service">Disability Support Service</a></li>
<li><a href="#previous-versions-of-the-class" id="toc-previous-versions-of-the-class" class="nav-link" data-scroll-target="#previous-versions-of-the-class">Previous versions of the class</a></li>
<li><a href="#typos-and-corrections" id="toc-typos-and-corrections" class="nav-link" data-scroll-target="#typos-and-corrections">Typos and corrections</a></li>
<li><a href="#r-session-information" id="toc-r-session-information" class="nav-link" data-scroll-target="#r-session-information">R session information</a></li>
</ul></li>
<li><a href="#r-session-information" id="toc-r-session-information" class="nav-link" data-scroll-target="#r-session-information">R session information</a></li>
</ul>
</nav>
</nav>
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<p><em>This lecture as the rest of the course is adapted from the version <a href="https://www.stephaniehicks.com/">Stephanie C. Hicks</a> designed and maintained in 2021 - 2022. Check the recent changes to this file through the <a href="https://github.com/lcolladotor/jhustatcomputing2023/commits/main/posts/01-welcome/index.qmd">GitHub history</a>.</em></p>
<p><em>This lecture, as the rest of the course, is adapted from the version <a href="https://www.stephaniehicks.com/">Stephanie C. Hicks</a> designed and maintained in 2021 and 2022. Check the recent changes to this file through the <a href="https://github.com/lcolladotor/jhustatcomputing2023/commits/main/posts/01-welcome/index.qmd">GitHub history</a>.</em></p>
<p>Welcome! I am very excited to have you in our one-term (i.e.&nbsp;half a semester) course on Statistical Computing course number (140.776) offered by the <a href="https://publichealth.jhu.edu/departments/biostatistics">Department of Biostatistics</a> at the <a href="https://publichealth.jhu.edu">Johns Hopkins Bloomberg School of Public Health</a>.</p>
<p>This course is designed for ScM and PhD students at Johns Hopkins Bloomberg School of Public Health. I am pretty flexible about permitting outside students, but I want everyone to be aware of the goals and assumptions so no one feels like they are surprised by how the class works.</p>
<div class="callout callout-style-default callout-note callout-titled">
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<h2 class="anchored" data-anchor-id="typos-and-corrections">Typos and corrections</h2>
<p>Feel free to submit typos/errors/etc via the github repository associated with the class: <a href="https://github.com/lcolladotor/jhustatcomputing2023" class="uri">https://github.com/lcolladotor/jhustatcomputing2023</a>. You will have the thanks of your grateful instructor!</p>
</section>
<section id="r-session-information" class="level2">
<h2 class="anchored" data-anchor-id="r-session-information">R session information</h2>
</section>
<section id="r-session-information" class="level1">
<h1>R session information</h1>
<div class="cell">
<div class="sourceCode cell-code" id="cb2"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="fu">options</span>(<span class="at">width =</span> <span class="dv">120</span>)</span>
<span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a>sessioninfo<span class="sc">::</span><span class="fu">session_info</span>()</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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</div>


</section>
</section>

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Expand Up @@ -263,6 +263,7 @@ <h2 id="toc-title">Table of contents</h2>
<li><a href="#additional-resources" id="toc-additional-resources" class="nav-link" data-scroll-target="#additional-resources">Additional Resources</a></li>
<li><a href="#rtistry" id="toc-rtistry" class="nav-link" data-scroll-target="#rtistry">rtistry</a></li>
</ul></li>
<li><a href="#r-session-information" id="toc-r-session-information" class="nav-link" data-scroll-target="#r-session-information">R session information</a></li>
</ul>
</nav>
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Expand All @@ -276,6 +277,7 @@ <h2 id="toc-title">Table of contents</h2>



<p><em>This lecture, as the rest of the course, is adapted from the version <a href="https://www.stephaniehicks.com/">Stephanie C. Hicks</a> designed and maintained in 2021 and 2022. Check the recent changes to this file through the <a href="https://github.com/lcolladotor/jhustatcomputing2023/commits/main/posts/02-introduction-to-r-and-rstudio/index.qmd">GitHub history</a>.</em></p>
<blockquote class="blockquote">
<p>There are only two kinds of languages: the ones people complain about and the ones nobody uses. —<em>Bjarne Stroustrup</em></p>
</blockquote>
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<p>We will not do that now, but it is quite likely that at one point later in this course we will.</p>
<p>You only need to install a package once, unless you upgrade/re-install R. Once installed, you still need to load the package before you can use it. That has to happen every time you start a new R session. You do that using the <code>library()</code> command. For instance to load the <code>ggplot2</code> package, type</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb4"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(<span class="st">'ggplot2'</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="sourceCode cell-code" id="cb4"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(<span class="st">"ggplot2"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<p>You may or may not see a short message on the screen. Some packages show messages when you load them, and others do not.</p>
<p>This was a quick overview of R packages. We will use a lot of them, so you will get used to them rather quickly.</p>
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</div>
</div>
<p>[‘Water Colours’ from Danielle Navarro <a href="https://art.djnavarro.net" class="uri">https://art.djnavarro.net</a>]</p>
</section>
</section>
<section id="r-session-information" class="level1">
<h1>R session information</h1>
<div class="cell">
<div class="sourceCode cell-code" id="cb5"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="fu">options</span>(<span class="at">width =</span> <span class="dv">120</span>)</span>
<span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a>sessioninfo<span class="sc">::</span><span class="fu">session_info</span>()</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.3.1 (2023-06-16)
os macOS Ventura 13.5
system aarch64, darwin20
ui X11
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/New_York
date 2023-08-17
pandoc 3.1.5 @ /opt/homebrew/bin/ (via rmarkdown)

─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────
package * version date (UTC) lib source
cli 3.6.1 2023-03-23 [1] CRAN (R 4.3.0)
colorout 1.2-2 2023-05-06 [1] Github (jalvesaq/colorout@79931fd)
digest 0.6.33 2023-07-07 [1] CRAN (R 4.3.0)
evaluate 0.21 2023-05-05 [1] CRAN (R 4.3.0)
fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.0)
htmltools 0.5.6 2023-08-10 [1] CRAN (R 4.3.0)
htmlwidgets 1.6.2 2023-03-17 [1] CRAN (R 4.3.0)
jsonlite 1.8.7 2023-06-29 [1] CRAN (R 4.3.0)
knitr 1.43 2023-05-25 [1] CRAN (R 4.3.0)
rlang 1.1.1 2023-04-28 [1] CRAN (R 4.3.0)
rmarkdown 2.24 2023-08-14 [1] CRAN (R 4.3.1)
rstudioapi 0.15.0 2023-07-07 [1] CRAN (R 4.3.0)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.0)
xfun 0.40 2023-08-09 [1] CRAN (R 4.3.0)
yaml 2.3.7 2023-01-23 [1] CRAN (R 4.3.0)

[1] /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library

──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────</code></pre>
</div>
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</section>
</section>

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Expand Down Expand Up @@ -223,6 +257,7 @@ <h2 id="toc-title">Table of contents</h2>
<li><a href="#additional-resources" id="toc-additional-resources" class="nav-link" data-scroll-target="#additional-resources">Additional Resources</a></li>
<li><a href="#rtistry" id="toc-rtistry" class="nav-link" data-scroll-target="#rtistry">rtistry</a></li>
</ul></li>
<li><a href="#r-session-information" id="toc-r-session-information" class="nav-link" data-scroll-target="#r-session-information">R session information</a></li>
</ul>
</nav>
</nav>
Expand All @@ -236,6 +271,7 @@ <h2 id="toc-title">Table of contents</h2>



<p><em>This lecture, as the rest of the course, is adapted from the version <a href="https://www.stephaniehicks.com/">Stephanie C. Hicks</a> designed and maintained in 2021 and 2022. Check the recent changes to this file through the <a href="https://github.com/lcolladotor/jhustatcomputing2023/commits/main/posts/03-introduction-to-gitgithub/index.qmd">GitHub history</a>.</em></p>
<!-- Add interesting quote -->
<section id="pre-lecture-materials" class="level1">
<h1>Pre-lecture materials</h1>
Expand Down Expand Up @@ -420,9 +456,52 @@ <h2 class="anchored" data-anchor-id="rtistry">rtistry</h2>
</div>
</div>
<p>[‘Flametree’ from Danielle Navarro <a href="https://art.djnavarro.net" class="uri">https://art.djnavarro.net</a>]</p>
</section>
</section>
<section id="r-session-information" class="level1">
<h1>R session information</h1>
<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">options</span>(<span class="at">width =</span> <span class="dv">120</span>)</span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a>sessioninfo<span class="sc">::</span><span class="fu">session_info</span>()</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.3.1 (2023-06-16)
os macOS Ventura 13.5
system aarch64, darwin20
ui X11
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/New_York
date 2023-08-17
pandoc 3.1.5 @ /opt/homebrew/bin/ (via rmarkdown)

─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────
package * version date (UTC) lib source
cli 3.6.1 2023-03-23 [1] CRAN (R 4.3.0)
colorout 1.2-2 2023-05-06 [1] Github (jalvesaq/colorout@79931fd)
digest 0.6.33 2023-07-07 [1] CRAN (R 4.3.0)
evaluate 0.21 2023-05-05 [1] CRAN (R 4.3.0)
fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.0)
htmltools 0.5.6 2023-08-10 [1] CRAN (R 4.3.0)
htmlwidgets 1.6.2 2023-03-17 [1] CRAN (R 4.3.0)
jsonlite 1.8.7 2023-06-29 [1] CRAN (R 4.3.0)
knitr 1.43 2023-05-25 [1] CRAN (R 4.3.0)
rlang 1.1.1 2023-04-28 [1] CRAN (R 4.3.0)
rmarkdown 2.24 2023-08-14 [1] CRAN (R 4.3.1)
rstudioapi 0.15.0 2023-07-07 [1] CRAN (R 4.3.0)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.0)
xfun 0.40 2023-08-09 [1] CRAN (R 4.3.0)
yaml 2.3.7 2023-01-23 [1] CRAN (R 4.3.0)

[1] /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library

──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────</code></pre>
</div>
</div>


</section>
</section>

</main> <!-- /main -->
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