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Pipeline for Microbial Analysis (Quality control, Assembly, Annotation, Resistome, Virulome, Plasmid, Serotype, Prophages, Capsule, O-Locus, Closest genome and Genome Browser

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PIPA

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Description

Pipeline for Microbial Genomic Analysis

Installation

Requirements

  • Need to be root of system to be installed.
  • Run ./setup.sh to install all necessary libraries.

Contact

Dr Louise Cerdeira - [email protected]

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Pipeline for Microbial Analysis (Quality control, Assembly, Annotation, Resistome, Virulome, Plasmid, Serotype, Prophages, Capsule, O-Locus, Closest genome and Genome Browser

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