run as fast as you can to stay in the same place

kingaa · Sep 9, 2024 · 3065a3e · 3065a3e
1 parent 0f8f134
commit 3065a3e
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Showing 10 changed files with 151 additions and 86 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -1,6 +1,11 @@
+examples
+repo
 revdep
+scripts
 tools
-examples
+wiki
+www
+yaml
 tests/Makefile
 tests/(.+?)\.png$
 tests/(.+?)\.pdf$
@@ -34,13 +39,10 @@ TODO\.md$
 \.tests
 Makefile
 rules.mk
-yaml
-scripts
 lib
 libs
 library
 check
-www
 ^(.+?)\.pdf
 ^(.+?)\.tar\.gz
 ^(.+?)\.tgz

diff --git a/.github/workflows/binary-build.yml b/.github/workflows/binary-build.yml
@@ -5,13 +5,43 @@ on:
     tags:
       - '**'
   workflow_dispatch:
-    branches:
-      - '*'
 
 name: binary-build
 
+env:
+  release_name: ${{ vars.repo_name }}_${{ github.ref_name }}
+
 jobs:
-  binary-build:
+  source_build:          
+    runs-on: ubuntu-latest
+    name: Build source tarball
+    strategy:
+      fail-fast: false
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: latest
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: |
+            any::pkgbuild
+
+      - name: Build source tarball
+        run: |
+          R CMD build --force --no-manual --resave-data --compact-vignettes=both --md5 .
+          mkdir -p ${{ github.workspace }}/artifacts
+          cp ${{ env.release_name }}.tar.gz ${{ github.workspace }}/artifacts
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: source_tarball
+          path: ${{ github.workspace }}/artifacts/${{ env.release_name }}.tar.gz
+
+  binary_build:
     runs-on: ${{ matrix.config.os }}
 
     name: ${{ matrix.config.os }} (${{ matrix.config.r }})
@@ -20,37 +50,47 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: ubuntu-latest,  r: 'release'}
-          - {os: macOS-latest,   r: 'release'}
-          - {os: windows-latest, r: 'release'}
-
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-      R_KEEP_PKG_SOURCE: yes
+          - {os: macOS-latest,   r: 'release', ext: "tgz"}
+          - {os: windows-latest, r: 'release', ext: "zip"}
 
     steps:
-      - uses: actions/checkout@v3.1.0
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
-          http-user-agent: ${{ matrix.config.http-user-agent }}
-          use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: rcmdcheck 
-
+          extra-packages: |
+            any::pkgbuild
+
       - name: Build binary
         run: pkgbuild::build(binary=TRUE,manual=TRUE)
         shell: Rscript {0}
-      
-      - name: Copying tarball
+
+      - name: Copy tarball
         run: |
           mkdir -p ${{ github.workspace }}/artifacts
-          cp ../tao_* ${{ github.workspace }}/artifacts
-          
-      - uses: actions/upload-artifact@v3.1.1
+          cp ../${{ env.release_name }}.${{ matrix.config.ext }} ${{ github.workspace }}/artifacts
+
+      - uses: actions/upload-artifact@v4
         with:
-          name: binary-${{ matrix.config.os }}-${{ matrix.config.r }}
-          path: ${{ github.workspace }}/artifacts
+          name: ${{ matrix.config.os }}-${{ matrix.config.r }}
+          path: ${{ github.workspace }}/artifacts/${{ env.release_name }}.${{ matrix.config.ext }}
+
+# Workflow derived from https://github.com/marketplace/actions/create-release
+  create_release:
+    needs: [ source_build, binary_build ]
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+    - uses: actions/checkout@v4
+    - uses: actions/download-artifact@v4
+      with:
+        path: artifacts
+    - uses: ncipollo/release-action@v1
+      with:
+        draft: true
+        artifacts: "artifacts/*/*"
diff --git a/.github/workflows/r-cmd-check.yml b/.github/workflows/r-cmd-check.yml
@@ -4,11 +4,24 @@ on:
   push:
     branches:
       - '*'
+    paths:
+      - DESCRIPTION
+      - NAMESPACE
+      - R/**
+      - src/**
+      - tests/**
+      - man/**
+      - data/**
   pull_request:
-    branches: [master]
+    paths:
+      - DESCRIPTION
+      - NAMESPACE
+      - R/**
+      - src/**
+      - tests/**
+      - man/**
+      - data/**
   workflow_dispatch:
-    branches:
-      - '*'
 
 name: R-CMD-check
 
@@ -22,56 +35,34 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: ubuntu-22.04,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,  r: 'devel', http-user-agent: 'release'}
           - {os: ubuntu-latest,  r: 'release'}
-          - {os: ubuntu-latest,  r: 'oldrel-1'}
-          - {os: ubuntu-20.04,   r: '4.0.0'}
-          - {os: macOS-11,       r: 'release'}
-          - {os: macOS-12,       r: 'release'}
+          - {os: ubuntu-20.04,   r: '4.1.0'}
+          - {os: macOS-latest,   r: 'release'}
           - {os: windows-latest, r: 'release'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_KEEP_PKG_SOURCE: yes
-      _R_CHECK_DEPENDS_ONLY_: false
-      _R_CHECK_ALL_NON_ISO_C_: true
-      _R_CHECK_CODE_ASSIGN_TO_GLOBALENV_: true
-      _R_CHECK_CODE_ATTACH_: true
-      _R_CHECK_CODE_DATA_INTO_GLOBALENV_: true
-      _R_CHECK_CODE_USAGE_VIA_NAMESPACES_: true
-      _R_CHECK_DEPRECATED_DEFUNCT_: true
-      _R_CHECK_EXECUTABLES_EXCLUSIONS_: false
-      _R_CHECK_INSTALL_DEPENDS_: true
-      _R_CHECK_NO_RECOMMENDED_: true
-      _R_CHECK_OVERWRITE_REGISTERED_S3_METHODS_: true
-      _R_CHECK_REPLACING_IMPORTS_: true
-      _R_CHECK_S3_METHODS_NOT_REGISTERED_: true
-      _R_CHECK_SCREEN_DEVICE_: stop
-      _R_CHECK_SRC_MINUS_W_IMPLICIT_: true
-      _R_CHECK_SRC_MINUS_W_UNUSED_: true
-      _R_CHECK_SUGGESTS_ONLY_: true
-      _R_CHECK_TOPLEVEL_FILES_: true
-      _R_CHECK_VC_DIRS_: true
-      _R_CHECK_WALL_FORTRAN_: true
-      _R_CHECK_USE_CODETOOLS_: true
-      _R_CHECK_CODETOOLS_PROFILE_: "suppressLocalUnused=FALSE,suppressPartialMatchArgs=FALSE,suppressParamUnused=TRUE,suppressUndefined=FALSE"
 
     steps:
-      - uses: actions/checkout@v3.1.0
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
+          extra-repositories: |
+            https://kingaa.github.io/
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: any::rcmdcheck
 
       - uses: r-lib/actions/check-r-package@v2
 
-      - uses: actions/upload-artifact@v3.1.1
+      - uses: actions/upload-artifact@v4
         with:
           name: ${{ matrix.config.os }}-${{ matrix.config.r }}-results
-          path: check
+          path: check/${{ vars.repo_name }}.Rcheck/00check.log
diff --git a/.github/workflows/test-coverage.yml b/.github/workflows/test-coverage.yml
@@ -1,13 +1,27 @@
 # Workflow derived from https://github.com/r-lib/actions/tree/master/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
+  workflow_dispatch:
   push:
     branches: [master]
+    paths:
+      - DESCRIPTION
+      - NAMESPACE
+      - R/**
+      - src/**
+      - tests/**
+      - man/**
+      - data/**
   pull_request:
     branches: [master]
-  workflow_dispatch:
-    branches:
-      - '*'
+    paths:
+      - DESCRIPTION
+      - NAMESPACE
+      - R/**
+      - src/**
+      - tests/**
+      - man/**
+      - data/**
 
 name: test-coverage
 
@@ -18,7 +32,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3.1.0
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.gitignore b/.gitignore
@@ -17,15 +17,15 @@
 *.so
 *.gcda
 *.gcno
-tests/*.pdf
-scripts
+*.pdf
+/scripts
 lib
 library
 check
+repo
+wiki
 www
-*.pdf
-inst/doc/figure
-inst/doc/cache
+tmp
 covr.html
 covr.rds
 .DS_Store
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -10,4 +10,4 @@ License: GPL-3
 Encoding: UTF-8
 Suggests: tinytest
 Roxygen: list(roclets = c("collate", "namespace", "rd", "roxytest::tinytest_roclet"))
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.1
diff --git a/Makefile b/Makefile
@@ -1,6 +1,6 @@
-REPODIR = ../www
-INCLUDES=
-HEADERS=
+REPODIR = repo
+INCLUDES =
+HEADERS =
+SESSION_PKGS = datasets,utils,grDevices,graphics,stats,methods,tidyverse,$(PKG)
 
 include rules.mk
-
diff --git a/man/tao-package.Rd b/man/tao-package.Rd