DO NOT MERGE: Testing running kb-sdk kb_quast module with JAWS #18
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| name: KBase SDK Tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| pull_request: | |
| branches: | |
| - master | |
| - main | |
| - develop | |
| jobs: | |
| sdk_tests: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Check out GitHub repo | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| uses: actions/checkout@v2 | |
| - name: Set up test environment | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| shell: bash | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_TEST_TOKEN }} | |
| run: | | |
| sh GHA_scripts/make_testdir && echo "Created test_local" | |
| test -f "test_local/test.cfg" && echo "Confirmed config exists" | |
| - name: Configure authentication | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| shell: bash | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_TEST_TOKEN }} | |
| run: | | |
| # Add token to config | |
| sed -ie "s/^test_token=.*$/&$KBASE_TEST_TOKEN/g" ./test_local/test.cfg | |
| - name: Run tests | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| shell: bash | |
| run: | | |
| sh GHA_scripts/kb-sdk test --verbose | |
| # TODO COVERAGE alter the Makefile to generate coverage info and uncomment | |
| # - name: Upload coverage to Codecov | |
| # uses: codecov/codecov-action@v3 | |
| # with: | |
| # token: ${{ secrets.CODECOV_TOKEN }} | |
| # fail_ci_if_error: true |