Bump pytest-cov from 5.0.0 to 6.0.0 #31
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| name: KBase SDK Tests | |
| on: | |
| pull_request: | |
| jobs: | |
| sdk_tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out GitHub repo | |
| uses: actions/checkout@master | |
| - name: Set up test environment | |
| shell: bash | |
| run: | | |
| # Cache the group for the docker file | |
| if [ ! -e $HOME/.kbsdk.cache ] ; then | |
| docker run -i -v /var/run/docker.sock:/var/run/docker.sock --entrypoint ls ghcr.io/kbase/kb_sdk_patch-develop:br-0.0.4-rc-1 -l /var/run/docker.sock|awk '{print $4}' > $HOME/.kbsdk.cache | |
| fi | |
| # ignore the exit code | |
| docker run -i --rm -v $HOME:$HOME -u $(id -u) -w $(pwd) -v /var/run/docker.sock:/var/run/docker.sock -e DUSER=$USER -e DSHELL=$SHELL --group-add $(cat $HOME/.kbsdk.cache) ghcr.io/kbase/kb_sdk_patch-develop:br-0.0.4-rc-1 test || true | |
| - name: Confirm config exists and add token | |
| shell: bash | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_TEST_TOKEN }} | |
| run: | | |
| test -f "test_local/test.cfg" && echo "Confirmed config exists" | |
| # Add token to config | |
| sed -ie "s/^test_token=.*$/&$KBASE_TEST_TOKEN/g" ./test_local/test.cfg | |
| - name: Run tests | |
| shell: bash | |
| run: | | |
| docker run -i --rm -v $HOME:$HOME -w $(pwd) -v /var/run/docker.sock:/var/run/docker.sock -e DSHELL=$SHELL --group-add $(cat $HOME/.kbsdk.cache) ghcr.io/kbase/kb_sdk_patch-develop:br-0.0.4-rc-1 test --verbose | |
| - name: Upload coverage to Codecov | |
| id: send_to_codecov | |
| uses: codecov/codecov-action@main | |
| continue-on-error: true | |
| with: | |
| files: ./python-coverage/coverage.xml | |
| fail_ci_if_error: true | |
| token: ${{ secrets.CODECOV_TOKEN }} |