Remove sample name parsing which doesn't work when directories have .…#100

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ericenns wants to merge 2 commits intokatholt:masterfrom phac-nml:fix_sample_name_parsing

+7-7

Commits on Nov 28, 2017

Remove sample name parsing which doesn't work when directories have . in the name, instead just pass sample_name along to functions requiring it.
ericenns
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Commits on Dec 14, 2017

Added in missing )
ericenns
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