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fix: Fix typos
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jdeschamps committed Sep 19, 2024
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# MicroSSIM

MicroSSIM is an image metrics aimed at addressing the shortcominbs of the Structural
Similarity Index (SSIM), in particular in the context of microscopy images. Indeed,
MicroSSIM is an image measure aimed at addressing the shortcomings of the Structural
Similarity Index Measure (SSIM), in particular in the context of microscopy images. Indeed,
in microscopy, degraded images (e.g. lower signal to noise ratio) often have a different
dynamic range than the original images. This can lead to a poor performance of SSIM.

The metrics normalizes the images using background subtraction and a more appropriate
The measure normalizes the images using background subtraction and a more appropriate
range estimation. It then estimates a scaling factor used to scale the image
to the target (original image or ground truth). The metric is then computed
similarly to the SSIM.

MicroSSIM is easily extensible to other SSIM-like metrics, such as Multi-Scale SSIM
MicroSSIM is easily extensible to other SSIM-like measures, such as Multi-Scale SSIM
(MS-SSIM), for which we provide an example.

See the [paper](https://arxiv.org/abs/2408.08747) for more details.
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## Tips for deep learning

MicroSSIM was developed in the context of deep-learning, in which SSIM is often used
as a metrics to compare denoised and ground-truth images. The tips presented here are
as a measure to compare denoised and ground-truth images. The tips presented here are
valid beyond deep-learning.

The larger the dataset, the better the estimate of the scaling factor will be. Therefore,
it is recommended to fit the metrics on the entire dataset (e.g. the whole training
it is recommended to fit the measure on the entire dataset (e.g. the whole training
dataset). Once the data fitted, the `MSSIM` class has registered the parameters used
for normalization and scaling. You can then score a subset of the data (e.g. the validation
or test datasets) using the `score` method.
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