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Exacteness tests and CI improvements (#73 and #74) #78

Merged
merged 58 commits into from
Apr 23, 2024
Merged

Exacteness tests and CI improvements (#73 and #74) #78

merged 58 commits into from
Apr 23, 2024

Commits on Mar 5, 2024

  1. add random_state to scikit_learn functions

    @brash6
    brash6 committed Mar 5, 2024
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  2. remove unexpected random_state

    @brash6
    brash6 committed Mar 5, 2024
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  3. tests CI

    mzbakh committed Mar 5, 2024
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Commits on Mar 6, 2024

  1. tests without R dependencies

    mzbakh committed Mar 6, 2024
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Commits on Mar 8, 2024

  1. tests ignoring R dependencies

    mzbakh committed Mar 8, 2024
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  2. tests ignoring R dependencies 2

    mzbakh committed Mar 8, 2024
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Commits on Mar 14, 2024

  1. warnings if R or an R package is not installed (mediation.py)

    mzbakh committed Mar 14, 2024
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  2. warnings if R or an R package is not installed

    @zbakhm
    zbakhm committed Mar 14, 2024
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  3. workflow update

    mzbakh committed Mar 14, 2024
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  4. workflow update 2

    mzbakh committed Mar 14, 2024
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  5. workflow update 3

    mzbakh committed Mar 14, 2024
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  6. workflow update 4

    mzbakh committed Mar 14, 2024
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  7. workflow update 5

    mzbakh committed Mar 14, 2024
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  8. saving packages to cache

    mzbakh committed Mar 14, 2024
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  9. saving packages to cache 2

    mzbakh committed Mar 14, 2024
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  10. saving packages to cache 3

    mzbakh committed Mar 14, 2024
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  11. tests using cache

    mzbakh committed Mar 14, 2024
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  12. update workfolws

    mzbakh committed Mar 14, 2024
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  13. last update

    mzbakh committed Mar 14, 2024
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Commits on Mar 15, 2024

  1. Removing commented lines & making sure to apply the 80 characters lim… 

    …it rule
    @zbakhm
    zbakhm committed Mar 15, 2024
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Commits on Mar 18, 2024

  1. add DS_STORE in gitignore file

    @brash6
    brash6 committed Mar 18, 2024
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  2. force pandas version to 1.2.1 - add pytest to setup file

    @brash6
    brash6 committed Mar 18, 2024
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  3. add generate_tests_results.py and tests_results.npy files

    @brash6
    brash6 committed Mar 18, 2024
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  4. add constants file

    @brash6
    brash6 committed Mar 18, 2024
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  5. get rid of unused imports

    @brash6
    brash6 committed Mar 18, 2024
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  6. minor reformatting

    @brash6
    brash6 committed Mar 18, 2024
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  7. handle glmnet error in tolerance tests

    @brash6
    brash6 committed Mar 18, 2024
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  8. add exact estimation tests

    @brash6
    brash6 committed Mar 18, 2024
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  9. add DS_STORE to gitignore

    @brash6
    brash6 committed Mar 18, 2024
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  10. Merge branch 'develop' into create_new_tests

    @brash6
    brash6 authored Mar 18, 2024
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Commits on Mar 19, 2024

  1. use a dictionary for tolerance thresholds

    @brash6
    brash6 committed Mar 19, 2024
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  2. discard previous changes (tolerance threshold dict)

    @brash6
    brash6 committed Mar 19, 2024
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  3. estimators now return a tuple instead of a list

    @brash6
    brash6 committed Mar 19, 2024
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  4. optimise constants

    @brash6
    brash6 committed Mar 19, 2024
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  5. Merge pull request #73 from judithabk6/test-CI 

    CI part & separating R and Python dependencies
    @brash6
    brash6 authored Mar 19, 2024
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  6. Merge branch 'develop' into create_new_tests

    @brash6
    brash6 committed Mar 19, 2024
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Commits on Mar 20, 2024

  1. Solving issue #76: fail import of _get_interactions

    @zbakhm
    zbakhm committed Mar 20, 2024
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  2. Update src/med_bench/utils/constants.py 

    Co-authored-by: bthirion <[email protected]>
    @brash6 @bthirion
    brash6 and bthirion authored Mar 20, 2024
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  3. remove useless comment in nuisances.py

    @brash6
    brash6 committed Mar 20, 2024
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  4. Enhance readibility of generate_tests_results.py functions

    @brash6
    brash6 committed Mar 20, 2024
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  5. Merge pull request #74 from judithabk6/create_new_tests 

    Add estimation exactness unit tests
    @brash6
    brash6 authored Mar 20, 2024
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Commits on Mar 21, 2024

  1. add ci execution for develop branch

    @brash6
    brash6 committed Mar 21, 2024
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  2. increase tolerance threshold for exactness tests

    @brash6
    brash6 committed Mar 21, 2024
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Commits on Mar 25, 2024

  1. Adapt tolerance thresholds

    @brash6
    brash6 committed Mar 25, 2024
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  2. Address the 'DataFrame' object has no attribute 'iteritems' error

    @brash6
    brash6 committed Mar 25, 2024
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Commits on Mar 26, 2024

  1. add default clipping for IPW and multiply robust estimators

    @judithabk6
    judithabk6 committed Mar 26, 2024
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Commits on Mar 28, 2024

  1. clipping for dml

    @judithabk6
    judithabk6 committed Mar 28, 2024
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  2. Replacing warnings with errors in case R packages are not installed.

    @zbakhm
    zbakhm committed Mar 28, 2024
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  3. Merge branch 'ci_tests' of https://github.com/judithabk6/med_bench in… 

    …to ci_tests
    @zbakhm
    zbakhm committed Mar 28, 2024
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Commits on Apr 3, 2024

  1. Handle r not installed packages test exact estimations

    @brash6
    brash6 committed Apr 3, 2024
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Commits on Apr 5, 2024

  1. mediation_DML to mediation_dml

    @brash6
    brash6 committed Apr 5, 2024
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  2. catch DependencyNotInstalledError in tests

    @brash6
    brash6 committed Apr 5, 2024
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  3. adresse failing tests

    @brash6
    brash6 committed Apr 5, 2024
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  4. new generated results to match new estrimator names

    @brash6
    brash6 committed Apr 5, 2024
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  5. adressing failing tests

    @brash6
    brash6 committed Apr 5, 2024
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Commits on Apr 17, 2024

  1. testing code coverage

    @zbakhm
    zbakhm committed Apr 17, 2024
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Commits on Apr 19, 2024

  1. test codecov & badge

    @zbakhm
    zbakhm committed Apr 19, 2024
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Commits on Apr 22, 2024

  1. Merge pull request #79 from judithabk6/ci_tests 

    CI tests
    @brash6
    brash6 authored Apr 22, 2024
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