Global Refactoring #52
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| name: CI-code-cov | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: | |
| - main | |
| - develop | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.11' # Specify the Python version you want to use | |
| - name: Install Package in Editable Mode with Python Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e ".[dev]" | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.3.2' # Use the R version you prefer | |
| - name: Install R packages | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache: true | |
| cache-version: 1 | |
| dependencies: 'NA' | |
| install-pandoc: false | |
| packages: | | |
| [email protected] | |
| [email protected] | |
| grf | |
| causalweight | |
| mediation | |
| - name: Install plmed package | |
| run: | | |
| R -e "pak::pkg_install('ohines/plmed')" | |
| - name: Install Pytest and Coverage | |
| run: | | |
| pip install pytest pytest-cov | |
| - name: Run tests with coverage | |
| run: | | |
| export LD_LIBRARY_PATH=$(python -m rpy2.situation LD_LIBRARY_PATH):${LD_LIBRARY_PATH} | |
| pytest --cov=med_bench --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| # token: ${{ secrets.CODECOV_TOKEN }} | |
| token: 'e4829e41-01da-4d08-9e04-04443da957e3' | |
| slug: judithabk6/med_bench | |