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1. SEACR SEACR Public

   Forked from FredHutch/SEACR

   SEACR: Sparse Enrichment Analysis for CUT&RUN

   Shell

2. cutandrun cutandrun Public

   Forked from nf-core/cutandrun

   Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

   Nextflow

3. docker docker Public

   Roopra Lab repository for docker files for running various jobs on CHTC @ UW-Madison

   Dockerfile

4. chtc-trim chtc-trim Public

   Roopra Lab repository for running fastqc and trimming scripts and submit files for CHTC @ UW-Madison

   Shell

5. chtc-alignment chtc-alignment Public

   Roopra Lab repository for running sequence alignment jobs on CHTC @ UW-Madison

   Shell

6. chtc-callpeak chtc-callpeak Public

   Roopra Lab repository for .sh/.sub scripts for calling peaks using MACS2 on CHTC @ UW-Madison

   Shell