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@biom-format @EarthMicrobiomeProject @qiime @pycogent @biocore @qiime2 @python3statement

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Demon's Souls Server Emulator

Python 142 32 Updated Apr 10, 2018

a Hassle-Free Python Experience

Rust 13,974 472 Updated Jan 25, 2025

Simple succinct data structures (in Rust)

Rust 50 8 Updated Nov 27, 2024

A compressed, associative, exact, and weighted dictionary for k-mers.

C++ 86 18 Updated Oct 13, 2024

Easy rate-limiting for python requests

Python 89 7 Updated Jan 17, 2025

A genomic minhashing implementation in Rust

Rust 93 8 Updated Jan 15, 2024

FASTQ compression

C 124 21 Updated Aug 15, 2023

Python and Rust library for loading, saving, and manipulating taxonomic trees

Rust 36 3 Updated Nov 1, 2024

Fast FASTX parsing and k-mer methods in Rust

Rust 181 25 Updated Jan 22, 2025

Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine

Python 489 51 Updated Apr 23, 2019
Python 3 Updated Sep 1, 2020

A library to convert python requests request object to curl command.

Python 395 31 Updated Feb 22, 2023

Polished, feature rich, accessible form inputs built with React

TypeScript 2,349 393 Updated Jan 2, 2025

Business intelligence made simple

Ruby 4,602 473 Updated Dec 29, 2024

The Python micro framework for building web applications.

Python 68,630 16,267 Updated Jan 5, 2025

Command line interface and Python client library for the One Codex API

Python 24 12 Updated Dec 19, 2024

The Datadog Python library

Python 619 305 Updated Jan 24, 2025

Integrated Software for Imagers and Spectrometers v3. ISIS3 is a digital image processing software package to manipulate imagery collected by current and past NASA and International planetary missi…

C++ 203 171 Updated Jan 24, 2025

Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.

Python 286,937 47,819 Updated Dec 2, 2024

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

Python 439 204 Updated Dec 20, 2024

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

Python 105 16 Updated Mar 30, 2020

A robust, extensible metagenomics pipeline

Python 168 42 Updated Aug 15, 2024

Auto-parameterizing QC Pipeline for Illumina sequencing runs

Python 17 7 Updated Jul 9, 2024
Jupyter Notebook 14 20 Updated Jun 21, 2018

SHallow shOtGUN profiler

Python 54 19 Updated Mar 4, 2022

Sphinx extension for generating API documentation

Python 66 46 Updated Jan 10, 2025

SunPy - Python for Solar Physics

Python 940 605 Updated Jan 23, 2025

The pytest framework makes it easy to write small tests, yet scales to support complex functional testing

Python 12,349 2,732 Updated Jan 24, 2025

A package for creating and managing sample identifiers in comparative -omics datasets.

Jupyter Notebook 23 7 Updated Jan 30, 2017

Astronomy and astrophysics core library

Python 4,554 1,808 Updated Jan 24, 2025
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