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Lesion segmentation protocol#9

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plbenveniste wants to merge 28 commits intomainivadomed/ms-lesion-agnostic:mainfrom plb/lesion_seg_protocolivadomed/ms-lesion-agnostic:plb/lesion_seg_protocolCopy head branch name to clipboard

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Commits

Commits on Mar 21, 2024

• initialised the lesion_segmentation_protocol.md file based on comment from issue 77 on canproco repo

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• fixed typo based on Julien's comment

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Commits on Apr 10, 2024

• changed criterias to bullet points

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• replace link to example by hyperlink

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• typo correction in introduction

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• changed json link to json example in the readme

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• added examples of complicated lesion segmentations

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• QC explanation reformatting

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Commits on Apr 11, 2024

• add sct_qc commands

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• added software section

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• added ref at the bottom to other segmentation protocols

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• added step 2 : sc anatomy and lesion segmentation

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• julien typo fix : remove":"

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• typo fix : remove ":" 2

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• rewrite partial volume explanation

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• rewrite sentence on not segmenting above first vert

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• rewrite two options for seg

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• rewrite manual correction explanation

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• rewrite QC

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• rewrite protocol when unsure

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• change last section name

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• update dataset of multiple contrasts

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• remove dcm and sci

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• remove comment

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• add step 3

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• lesion definition suggestion

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• typo fix

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• changed step 1 title

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