feat: Add R 4.4.2 with BioC 3.20

insightsengineering · Jan 13, 2025 · c3e89e5 · c3e89e5
1 parent 8e42a6b
commit c3e89e5
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Showing 4 changed files with 16 additions and 14 deletions.
diff --git a/.github/workflows/deploy.yaml b/.github/workflows/deploy.yaml
@@ -40,7 +40,7 @@ on:
           R version (also used as the tag to pull the origin image).
         required: true
         type: choice
-        default: "4.4.1"
+        default: "4.4.2"
         options:
           - "4.1.0"
           - "4.1.1"
@@ -55,19 +55,20 @@ on:
           - "4.3.3"
           - "4.4.0"
           - "4.4.1"
+          - "4.4.2"
           - "latest"
       latest_r_version:
         description: |
           R Version to be aliased as the 'latest' tag".
           (Only relevant for rocker images).
         required: false
         type: string
-        default: "4.4.1"
+        default: "4.4.2"
       bioc_version:
         description: BioConductor Release
         required: true
         type: choice
-        default: "3.19"
+        default: "3.20"
         options:
           - "3.13"
           - "3.14"
@@ -76,14 +77,15 @@ on:
           - "3.17"
           - "3.18"
           - "3.19"
+          - "3.20"
           - "devel"
       latest_bioc_version:
         description: |
           BioC Version to be aliased as the 'latest' tag".
           (Only relevant for rocker images).
         required: false
         type: string
-        default: "3.19"
+        default: "3.20"
       tag:
         description: |
           Custom Image Tag/Version. Defaults to current date in the `YYYY.MM.DD` format if unspecified.

diff --git a/.github/workflows/scheduled.yaml b/.github/workflows/scheduled.yaml
@@ -36,12 +36,12 @@ jobs:
     strategy:
       matrix:
         image:
-          - distro_tag: '4.4.1'
-            bioc: '3.19'
+          - distro_tag: '4.4.2'
+            bioc: '3.20'
             distro: rstudio-local
             origin: rocker
-          - distro_tag: '4.4.1'
-            bioc: '3.19'
+          - distro_tag: '4.4.2'
+            bioc: '3.20'
             distro: rstudio
             origin: rocker
           - distro_tag: 'latest'
@@ -91,8 +91,8 @@ jobs:
               "distribution": "${{ matrix.image.distro }}",
               "r_version": "${{ matrix.image.distro_tag }}",
               "bioc_version": "${{ matrix.image.bioc }}",
-              "latest_r_version": "4.4.1",
-              "latest_bioc_version": "3.19",
+              "latest_r_version": "4.4.2",
+              "latest_bioc_version": "3.20",
               "tag": "",
               "tag_latest": "true",
               "release_tag": "${{ needs.create-release.outputs.release_tag }}"

diff --git a/.github/workflows/security-scan.yaml b/.github/workflows/security-scan.yaml
@@ -15,8 +15,8 @@ jobs:
     strategy:
       matrix:
         image:
-          - r: '4.4.1'
-            bioc: '3.19'
+          - r: '4.4.2'
+            bioc: '3.20'
             distro: rstudio
     steps:
       - name: Log in to the Container registry 🗝

diff --git a/Dockerfile b/Dockerfile
@@ -1,14 +1,14 @@
 # Build arguments
 ARG ORIGIN=rocker
 ARG ORIGIN_DISTRIBUTION=rstudio
-ARG R_VERSION=4.4.1
+ARG R_VERSION=4.4.2
 
 # Fetch base image
 FROM ${ORIGIN}/${ORIGIN_DISTRIBUTION}:${R_VERSION}
 
 # Reset args in build context
 ARG DISTRIBUTION=rstudio-local
-ARG BIOC_VERSION=3.19
+ARG BIOC_VERSION=3.20
 
 # Set image metadata
 LABEL org.opencontainers.image.licenses="GPL-2.0-or-later" \