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walkowif committed Jun 19, 2024
1 parent 371fb98 commit 7f58323
Showing 1 changed file with 12 additions and 9 deletions.
21 changes: 12 additions & 9 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -32,21 +32,24 @@ COPY --chmod=0755 [\
"./"\
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# In order to have predictable results from TinyTex installer, set the CTAN mirror.
# This variable is used by https://raw.githubusercontent.com/yihui/tinytex/master/tools/install-unx.sh.
# In order to have predictable results from TinyTex installer, set a reliable CTAN mirror.
# This variable is used by:
# https://yihui.org/gh/tinytex/tools/install-base.sh
# which is in turn used by:
# https://raw.githubusercontent.com/yihui/tinytex/master/tools/install-unx.sh.
ENV CTAN_REPO https://mirrors.mit.edu/CTAN/systems/texlive/tlnet

# Install sysdeps
RUN ./install_sysdeps.sh ${DISTRIBUTION}

# Install R packages
RUN ./install_cran_pkgs.R ${DISTRIBUTION}
RUN ./install_bioc.R ${BIOC_VERSION}
RUN ./install_bioc_pkgs.R ${DISTRIBUTION}
RUN ./install_gh_pkgs.R ${DISTRIBUTION}
RUN ./install_other_pkgs.R ${DISTRIBUTION}
RUN ./install_pip_pkgs.py ${DISTRIBUTION}
RUN ./test_installations.sh && \
RUN ./install_cran_pkgs.R ${DISTRIBUTION} && \
./install_bioc.R ${BIOC_VERSION} && \
./install_bioc_pkgs.R ${DISTRIBUTION} && \
./install_gh_pkgs.R ${DISTRIBUTION} && \
./install_other_pkgs.R ${DISTRIBUTION} && \
./install_pip_pkgs.py ${DISTRIBUTION} && \
./test_installations.sh && \
rm -f install_sysdeps.sh \
install_cran_pkgs.R \
install_bioc.R \
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