Author: David Funosas - INRAE
Date: 2021, June
Copyright: © INRAE, 2021
Application distributed under license Open License.
This is an interactive web app developed as a tool to easily access, visualize and manipulate physico-chemical data from the DYLAQ database.
Add the content of the repository into your folder tree.
Rename the file global_config.csv.dist to global_config.csv, and edit it to change the database connection values.
For the content of the application, show the files Readme_en.md or Readme_fr.md.
Package LibPath
askpass "askpass" "/usr/local/lib/R/site-library"
assertthat "assertthat" "/usr/local/lib/R/site-library"
backports "backports" "/usr/local/lib/R/site-library"
base64enc "base64enc" "/usr/local/lib/R/site-library"
BH "BH" "/usr/local/lib/R/site-library"
blob "blob" "/usr/local/lib/R/site-library"
broom "broom" "/usr/local/lib/R/site-library"
bslib "bslib" "/usr/local/lib/R/site-library"
cachem "cachem" "/usr/local/lib/R/site-library"
callr "callr" "/usr/local/lib/R/site-library"
cellranger "cellranger" "/usr/local/lib/R/site-library"
cli "cli" "/usr/local/lib/R/site-library"
clipr "clipr" "/usr/local/lib/R/site-library"
colorspace "colorspace" "/usr/local/lib/R/site-library"
commonmark "commonmark" "/usr/local/lib/R/site-library"
cpp11 "cpp11" "/usr/local/lib/R/site-library"
crayon "crayon" "/usr/local/lib/R/site-library"
crosstalk "crosstalk" "/usr/local/lib/R/site-library"
curl "curl" "/usr/local/lib/R/site-library"
DBI "DBI" "/usr/local/lib/R/site-library"
dbplyr "dbplyr" "/usr/local/lib/R/site-library"
digest "digest" "/usr/local/lib/R/site-library"
dplyr "dplyr" "/usr/local/lib/R/site-library"
DT "DT" "/usr/local/lib/R/site-library"
ellipsis "ellipsis" "/usr/local/lib/R/site-library"
evaluate "evaluate" "/usr/local/lib/R/site-library"
fansi "fansi" "/usr/local/lib/R/site-library"
farver "farver" "/usr/local/lib/R/site-library"
fastmap "fastmap" "/usr/local/lib/R/site-library"
forcats "forcats" "/usr/local/lib/R/site-library"
fs "fs" "/usr/local/lib/R/site-library"
generics "generics" "/usr/local/lib/R/site-library"
ggplot2 "ggplot2" "/usr/local/lib/R/site-library"
glue "glue" "/usr/local/lib/R/site-library"
gridExtra "gridExtra" "/usr/local/lib/R/site-library"
gtable "gtable" "/usr/local/lib/R/site-library"
haven "haven" "/usr/local/lib/R/site-library"
highr "highr" "/usr/local/lib/R/site-library"
hms "hms" "/usr/local/lib/R/site-library"
htmltools "htmltools" "/usr/local/lib/R/site-library"
htmlwidgets "htmlwidgets" "/usr/local/lib/R/site-library"
httpuv "httpuv" "/usr/local/lib/R/site-library"
httr "httr" "/usr/local/lib/R/site-library"
isoband "isoband" "/usr/local/lib/R/site-library"
jquerylib "jquerylib" "/usr/local/lib/R/site-library"
jsonlite "jsonlite" "/usr/local/lib/R/site-library"
knitr "knitr" "/usr/local/lib/R/site-library"
labeling "labeling" "/usr/local/lib/R/site-library"
later "later" "/usr/local/lib/R/site-library"
lazyeval "lazyeval" "/usr/local/lib/R/site-library"
leaflet "leaflet" "/usr/local/lib/R/site-library"
leaflet.providers "leaflet.providers" "/usr/local/lib/R/site-library"
lifecycle "lifecycle" "/usr/local/lib/R/site-library"
lubridate "lubridate" "/usr/local/lib/R/site-library"
magrittr "magrittr" "/usr/local/lib/R/site-library"
markdown "markdown" "/usr/local/lib/R/site-library"
mime "mime" "/usr/local/lib/R/site-library"
modelr "modelr" "/usr/local/lib/R/site-library"
munsell "munsell" "/usr/local/lib/R/site-library"
openssl "openssl" "/usr/local/lib/R/site-library"
pillar "pillar" "/usr/local/lib/R/site-library"
pkgconfig "pkgconfig" "/usr/local/lib/R/site-library"
png "png" "/usr/local/lib/R/site-library"
prettyunits "prettyunits" "/usr/local/lib/R/site-library"
processx "processx" "/usr/local/lib/R/site-library"
progress "progress" "/usr/local/lib/R/site-library"
promises "promises" "/usr/local/lib/R/site-library"
ps "ps" "/usr/local/lib/R/site-library"
purrr "purrr" "/usr/local/lib/R/site-library"
R6 "R6" "/usr/local/lib/R/site-library"
rappdirs "rappdirs" "/usr/local/lib/R/site-library"
raster "raster" "/usr/local/lib/R/site-library"
RColorBrewer "RColorBrewer" "/usr/local/lib/R/site-library"
Rcpp "Rcpp" "/usr/local/lib/R/site-library"
readr "readr" "/usr/local/lib/R/site-library"
readxl "readxl" "/usr/local/lib/R/site-library"
rematch "rematch" "/usr/local/lib/R/site-library"
reprex "reprex" "/usr/local/lib/R/site-library"
rgdal "rgdal" "/usr/local/lib/R/site-library"
rlang "rlang" "/usr/local/lib/R/site-library"
rmarkdown "rmarkdown" "/usr/local/lib/R/site-library"
RPostgreSQL "RPostgreSQL" "/usr/local/lib/R/site-library"
rstudioapi "rstudioapi" "/usr/local/lib/R/site-library"
rvest "rvest" "/usr/local/lib/R/site-library"
sass "sass" "/usr/local/lib/R/site-library"
scales "scales" "/usr/local/lib/R/site-library"
selectr "selectr" "/usr/local/lib/R/site-library"
shiny "shiny" "/usr/local/lib/R/site-library"
shiny.i18n "shiny.i18n" "/usr/local/lib/R/site-library"
shinydashboard "shinydashboard" "/usr/local/lib/R/site-library"
shinyFiles "shinyFiles" "/usr/local/lib/R/site-library"
shinyjs "shinyjs" "/usr/local/lib/R/site-library"
shinyWidgets "shinyWidgets" "/usr/local/lib/R/site-library"
sourcetools "sourcetools" "/usr/local/lib/R/site-library"
sp "sp" "/usr/local/lib/R/site-library"
stringi "stringi" "/usr/local/lib/R/site-library"
stringr "stringr" "/usr/local/lib/R/site-library"
sys "sys" "/usr/local/lib/R/site-library"
tibble "tibble" "/usr/local/lib/R/site-library"
tidyr "tidyr" "/usr/local/lib/R/site-library"
tidyselect "tidyselect" "/usr/local/lib/R/site-library"
tidyverse "tidyverse" "/usr/local/lib/R/site-library"
tinytex "tinytex" "/usr/local/lib/R/site-library"
utf8 "utf8" "/usr/local/lib/R/site-library"
vctrs "vctrs" "/usr/local/lib/R/site-library"
viridis "viridis" "/usr/local/lib/R/site-library"
viridisLite "viridisLite" "/usr/local/lib/R/site-library"
withr "withr" "/usr/local/lib/R/site-library"
xfun "xfun" "/usr/local/lib/R/site-library"
xml2 "xml2" "/usr/local/lib/R/site-library"
xtable "xtable" "/usr/local/lib/R/site-library"
yaml "yaml" "/usr/local/lib/R/site-library"
base "base" "/usr/lib/R/library"
boot "boot" "/usr/lib/R/library"
class "class" "/usr/lib/R/library"
cluster "cluster" "/usr/lib/R/library"
codetools "codetools" "/usr/lib/R/library"
compiler "compiler" "/usr/lib/R/library"
datasets "datasets" "/usr/lib/R/library"
foreign "foreign" "/usr/lib/R/library"
graphics "graphics" "/usr/lib/R/library"
grDevices "grDevices" "/usr/lib/R/library"
grid "grid" "/usr/lib/R/library"
KernSmooth "KernSmooth" "/usr/lib/R/library"
lattice "lattice" "/usr/lib/R/library"
MASS "MASS" "/usr/lib/R/library"
Matrix "Matrix" "/usr/lib/R/library"
methods "methods" "/usr/lib/R/library"
mgcv "mgcv" "/usr/lib/R/library"
nlme "nlme" "/usr/lib/R/library"
nnet "nnet" "/usr/lib/R/library"
parallel "parallel" "/usr/lib/R/library"
rpart "rpart" "/usr/lib/R/library"
spatial "spatial" "/usr/lib/R/library"
splines "splines" "/usr/lib/R/library"
stats "stats" "/usr/lib/R/library"
stats4 "stats4" "/usr/lib/R/library"
survival "survival" "/usr/lib/R/library"
tcltk "tcltk" "/usr/lib/R/library"
tools "tools" "/usr/lib/R/library"
utils "utils" "/usr/lib/R/library"
If the application is loaded in a home folder:
# Tell Shiny Server that we want to run as the user whose
# home directory we find the application in.
run_as :HOME_USER:;
preserve_logs true;
# Define a server that listens of port 3838.
server {
listen 3838;
# Define a location at the base URL
location / {
# Allow users to host their own apps in ~/ShinyApps
user_dirs;
# Optionally, you can restrict the privilege of hosting Shiny applications
# only to members of a particular Linux group.
# members_of shinyUsers;
}
}
map $http_upgrade $connection_upgrade {
default upgrade;
'' close;
}
server {
listen 443;
server_name <your_server_name>;
ssl on;
ssl_session_timeout 5m;
ssl_protocols TLSv1.2;
ssl_ciphers HIGH:!aNULL:!MD5;
ssl_prefer_server_ciphers on;
ssl_certificate /etc/ssl/certs/certificate.cer;
ssl_certificate_key /etc/ssl/private/privatekey.key;
access_log /var/log/nginx/shiny.log;
error_log /var/log/nginx/shiny-error.log error;
location / {
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
proxy_pass http://localhost:3838;
proxy_read_timeout 20d;
proxy_buffering off;
proxy_set_header Upgrade $http_upgrade;
proxy_set_header Connection $connection_upgrade;
proxy_http_version 1.1;
proxy_redirect / $scheme://$host/;
}
}