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New function merge_camtrapdp() #112

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New function merge_camtrapdp() #112

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Commits on Jul 23, 2024

  1. new function merge_camtrapdp()

    @sannegovaert
    sannegovaert committed Jul 23, 2024
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Commits on Jul 24, 2024

  1. Create test-merge_camtrapdp.R

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  2. document()

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  3. add test "merge_camtrapdp() returns no duplicated deploymentID's"

    @sannegovaert
    sannegovaert committed Jul 24, 2024
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Commits on Jul 25, 2024

  1. fix typo

    @sannegovaert
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  2. import digest

    @sannegovaert
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  3. update test

    @sannegovaert
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  4. give unique deploymentIDs to deployments

    @sannegovaert
    sannegovaert committed Jul 25, 2024
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  5. set unique mediaID's and observationID's

    @sannegovaert
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  6. update comment

    @sannegovaert
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  7. update documentation

    @sannegovaert
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  8. update examples

    @sannegovaert
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  9. correct typo

    @sannegovaert
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  10. delete space in messages

    @sannegovaert
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  11. test merge_camtrapdp() returns message when ID's are replaced

    @sannegovaert
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Commits on Jul 26, 2024

  1. update test "merge_camtrapdp() returns unique deplpymentID's, mediaID… 

    …'s and observationID's"
    @sannegovaert
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  2. character limit

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  3. create helper function replace_duplicated_deploymentID()

    @sannegovaert
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  4. create helper function vdigest_crc32()

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  5. rename and update function replace_duplicated_deploymentID() to `ge… 

    …nerate_deploymentID()`
    @sannegovaert
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  6. update comments

    @sannegovaert
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  7. new helper function generate_mediaID()

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  8. add helper function generate_observationID()

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  9. update generate_observationID() to replace_observationID()

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Commits on Jul 29, 2024

  1. update generate_mediaID() to replace_mediaID()

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  2. update generate_deploymentID() to replace_deploymentID()

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  3. new helper function replace_duplicatedIDs()

    @sannegovaert
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  4. update comment

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  5. check for length ID

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  6. test for valid name and title

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Commits on Jul 30, 2024

  1. capitilize comments

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  2. new helper function normalize_list()

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  3. new helper function is_subset()

    @sannegovaert
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  4. add and use helper functions update_unique() and remove_duplicates()

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  5. uncomment camtrapdp_error_length_ aborts because it cannot be tested … 

    …now and it reduces code coverage
    @sannegovaert
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  6. replace non-ASCII characters

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  7. replace stats::setNames

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Commits on Jul 31, 2024

  1. grammar

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Commits on Sep 9, 2024

  1. Merge branch 'main' into merge_datasets

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Commits on Sep 26, 2024

  1. Merge branch 'main' into merge_datasets

    @sannegovaert
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  2. leave name and title empty (don't have the user set those in the func… 

    …tion)
    @sannegovaert
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  3. typo

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  4. remove title and name arguments from tests

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  5. Do not generate an id. That also solves the problem of having meaning… 

    …less relatedIdentifiers
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  6. remove params title and name from documentation

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  7. documen()

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  8. replace project with projects

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Commits on Sep 27, 2024

  1. add helper function check_duplicate_ids()

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  2. remove replace_ () helper functions

    @sannegovaert
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  3. add documentation

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  4. new helper function 'add_suffx()`

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  5. remove helper function replace_duplicatedIDs()

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  6. use add_suffx()

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  7. add param suffix

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  8. keep NAs in mediaID when adding suffix

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  9. do not merge objects in helper function

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  10. also add suffix to eventIDs and individualDs

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  11. add warnings

    @sannegovaert
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  12. avoid warning message of any()

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  13. update tests

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  14. individualIDs are allowed to be duplicated between data packages

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  15. replace suffix with prefix

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  16. typo

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  17. merge_camtrapdp() adds prefixes to all values of identifiers

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  18. devtools::document()

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  19. test on warning invalid prefix

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  20. Update merge_camtrapdp.R

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  21. raise error, not warning

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  22. merge_camtrapdp() returns error on duplicate Data Package id

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  23. correction: not a warning but error

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  24. give unique ids to example datasets to merge

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Commits on Sep 30, 2024

  1. reorder tests

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  2. camtrapdp id must be character

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  3. change default prefix

    @sannegovaert
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  4. set default in function

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  5. typo

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  6. add tests for metadata

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  7. account for ID == NULL

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  8. correct mistake in keywords

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  9. add tests (work in progress)

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Commits on Oct 1, 2024

  1. typo

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  2. update test on metadata

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  3. small update

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Commits on Oct 8, 2024

  1. update prefix

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  2. update parameter names

    @sannegovaert
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  3. update parameter names and prefix

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  4. fix name merged DP

    @sannegovaert
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  5. rename merged DP

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  6. add tests on custom prefixes

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  7. Update test-merge_camtrapdp.R

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  8. add test on piping

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  9. set id to NULL instead of NA

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  10. add tests for description

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  11. id is set to NULL instead of NA

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Commits on Oct 9, 2024

  1. taxonomic scope should also be updated in filter_deployments()

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  2. set directory

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  3. update documentation

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Commits on Oct 16, 2024

  1. Merge branch 'main' into merge_datasets

    @peterdesmet
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  2. Update test-merge_camtrapdp.R

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  3. Update NEWS.md

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  4. add documentation

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  5. update on project(s)

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  6. use x and y instead of x1 and x2

    @sannegovaert
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  7. fix example

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  8. add visible binding for global variables

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  9. typo

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  10. document()

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  11. Update DESCRIPTION

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  12. avoid error on lacking visible binding

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Commits on Oct 17, 2024

  1. undo mistake

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  2. Merge branch 'main' into merge_datasets

    @peterdesmet
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Commits on Oct 25, 2024

  1. Merge branch 'main' into merge_datasets

    @peterdesmet
    peterdesmet committed Oct 25, 2024
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  2. check for additional resources

    @sannegovaert
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  3. add additional resources

    @sannegovaert
    sannegovaert committed Oct 25, 2024
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  4. move to helper functions

    @sannegovaert
    sannegovaert committed Oct 25, 2024
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  5. typo's

    @sannegovaert
    sannegovaert committed Oct 25, 2024
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  6. Update test-merge_camtrapdp.R

    @sannegovaert
    sannegovaert committed Oct 25, 2024
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  7. fix merge_additional_resources()

    @sannegovaert
    sannegovaert committed Oct 25, 2024
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  8. update documentation

    @sannegovaert
    sannegovaert committed Oct 25, 2024
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Commits on Oct 28, 2024

  1. reorder

    @sannegovaert
    sannegovaert committed Oct 28, 2024
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  2. Add new helper function

    @sannegovaert
    sannegovaert committed Oct 28, 2024
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  3. Replace NULL values (generated because of reading JSON) with NA

    @sannegovaert
    sannegovaert committed Oct 28, 2024
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  4. Update test-write_camtrapdp.R

    @sannegovaert
    sannegovaert committed Oct 28, 2024
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  5. Use resources()

    @peterdesmet
    peterdesmet committed Oct 28, 2024
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Commits on Oct 29, 2024

  1. avoid tidyselect warning

    @sannegovaert
    sannegovaert committed Oct 29, 2024
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