Update dependencies and add JetBrains tool group

Fixed incorrect `#egg` tags in GitHub dependencies and updated versions for `hypothesis` and `mysqlclient`. Added a new dependencies section for JetBrains tools covering various libraries including requests, numba, matplotlib, and testing tools.

epicbox-python/310/pyproject.toml

@@ -19,7 +19,7 @@ numpy = "1.26.4"
 scipy = "1.13.1"
 pandas = "2.2.3"
 lxml = "5.3.0"
-hypothesis = "6.116.0"
+hypothesis = "6.119.3"
 toolz = "1.0.0"
 Cython = "3.0.11"  # Cython is required by scikit-image
 matplotlib = "3.9.2"
@@ -60,7 +60,62 @@ pytest = "8.3.3"
 requests = "2.32.3"
 
 # required by sql challenge
-mysqlclient = "2.2.5"
+mysqlclient = "2.2.6"
+
+[tool.poetry.group.jetbrains.dependencies]
+# https://vyahhi.myjetbrains.com/youtrack/issue/CT-43
+# internet 
+requests = "2.32.3"
+beautifulsoup4 = "4.12.3"
+aiohttp = "3.11.6"
+yarl = "1.18.0"
+
+# c bindings and compillers
+numba = "0.60.0"
+Cython = "3.0.11"
+pybind11 = "2.13.6"
+
+# data
+scipy = "1.13.1"
+numpy = "1.26.4"
+pandas = "2.2.3"
+
+# visualisation
+matplotlib = "3.9.2"
+seaborn = "0.13.2"
+plotly = "5.24.1"
+
+# date and time
+tzlocal = "5.2"
+
+# serializers
+lxml = "5.3.0"
+flatbuffers = "24.3.25"
+protobuf = "5.28.3"
+PyYAML = "6.0.2"
+pyarrow = "18.0.0"
+
+# other stuff
+fastapi = "0.115.5"
+httpx = "0.27.2"
+SQLAlchemy = "1.4.54"
+GitPython = "3.1.43"
+
+# testing and linting
+flake8 = "7.1.1"
+Flake8-pyproject = "1.2.3"  # to configure flake8 with pyproject.toml
+ruff = "0.7.4"
+mypy = "1.13.0"
+black = "24.10.0"
+pytest = "8.3.3"
+pytest-timeout = "2.3.1"
+requests-mock = "1.12.1"
+pytest-mock = "3.14.0"
+pytest-cov = "6.0.0"
+psutil = "6.1.0"
+
+# types
+types-requests = "2.32.0.20241016"
 
 [build-system]
 requires = ["poetry-core"]

epicbox-python/310/requirements.txt

@@ -1,27 +1,27 @@
 aiohappyeyeballs==2.4.3 ; python_version >= "3.10" and python_version < "3.11"
-aiohttp==3.10.10 ; python_version >= "3.10" and python_version < "3.11"
+aiohttp==3.11.6 ; python_version >= "3.10" and python_version < "3.11"
 aiosignal==1.3.1 ; python_version >= "3.10" and python_version < "3.11"
 alembic==1.14.0 ; python_version >= "3.10" and python_version < "3.11"
 anyio==4.6.2.post1 ; python_version >= "3.10" and python_version < "3.11"
-apache-airflow-providers-common-compat==1.2.1 ; python_version >= "3.10" and python_version < "3.11"
+apache-airflow-providers-common-compat==1.2.2 ; python_version >= "3.10" and python_version < "3.11"
 apache-airflow-providers-common-io==1.4.2 ; python_version >= "3.10" and python_version < "3.11"
-apache-airflow-providers-common-sql==1.19.0 ; python_version >= "3.10" and python_version < "3.11"
-apache-airflow-providers-fab==1.5.0 ; python_version >= "3.10" and python_version < "3.11"
+apache-airflow-providers-common-sql==1.20.0 ; python_version >= "3.10" and python_version < "3.11"
+apache-airflow-providers-fab==1.5.1 ; python_version >= "3.10" and python_version < "3.11"
 apache-airflow-providers-ftp==3.11.1 ; python_version >= "3.10" and python_version < "3.11"
 apache-airflow-providers-http==4.13.2 ; python_version >= "3.10" and python_version < "3.11"
 apache-airflow-providers-imap==3.7.0 ; python_version >= "3.10" and python_version < "3.11"
-apache-airflow-providers-smtp==1.8.0 ; python_version >= "3.10" and python_version < "3.11"
-apache-airflow-providers-sqlite==3.9.0 ; python_version >= "3.10" and python_version < "3.11"
+apache-airflow-providers-smtp==1.8.1 ; python_version >= "3.10" and python_version < "3.11"
+apache-airflow-providers-sqlite==3.9.1 ; python_version >= "3.10" and python_version < "3.11"
 apache-airflow==2.10.3 ; python_version >= "3.10" and python_version < "3.11"
 apispec[yaml]==6.7.1 ; python_version >= "3.10" and python_version < "3.11"
 argcomplete==3.5.1 ; python_version >= "3.10" and python_version < "3.11"
 asgiref==3.8.1 ; python_version >= "3.10" and python_version < "3.11"
-async-timeout==4.0.3 ; python_version >= "3.10" and python_version < "3.11"
+async-timeout==5.0.1 ; python_version >= "3.10" and python_version < "3.11"
 attrs==24.2.0 ; python_version >= "3.10" and python_version < "3.11"
 babel==2.16.0 ; python_version >= "3.10" and python_version < "3.11"
 beautifulsoup4==4.12.3 ; python_version >= "3.10" and python_version < "3.11"
 biopython==1.84 ; python_version >= "3.10" and python_version < "3.11"
-blinker==1.8.2 ; python_version >= "3.10" and python_version < "3.11"
+blinker==1.9.0 ; python_version >= "3.10" and python_version < "3.11"
 breadability==0.1.20 ; python_version >= "3.10" and python_version < "3.11"
 cachelib==0.9.0 ; python_version >= "3.10" and python_version < "3.11"
 certifi==2024.8.30 ; python_version >= "3.10" and python_version < "3.11"
@@ -34,14 +34,14 @@ colorama==0.4.6 ; python_version >= "3.10" and python_version < "3.11"
 colorlog==6.9.0 ; python_version >= "3.10" and python_version < "3.11"
 configupdater==3.2 ; python_version >= "3.10" and python_version < "3.11"
 connexion[flask]==2.14.2 ; python_version >= "3.10" and python_version < "3.11"
-contourpy==1.3.0 ; python_version >= "3.10" and python_version < "3.11"
+contourpy==1.3.1 ; python_version >= "3.10" and python_version < "3.11"
 cron-descriptor==1.4.5 ; python_version >= "3.10" and python_version < "3.11"
 croniter==5.0.1 ; python_version >= "3.10" and python_version < "3.11"
 cryptography==43.0.3 ; python_version >= "3.10" and python_version < "3.11"
 cycler==0.12.1 ; python_version >= "3.10" and python_version < "3.11"
 cython==3.0.11 ; python_version >= "3.10" and python_version < "3.11"
 dawg-python==0.7.2 ; python_version >= "3.10" and python_version < "3.11"
-deprecated==1.2.14 ; python_version >= "3.10" and python_version < "3.11"
+deprecated==1.2.15 ; python_version >= "3.10" and python_version < "3.11"
 dill==0.3.9 ; python_version >= "3.10" and python_version < "3.11"
 django==5.1.3 ; python_version >= "3.10" and python_version < "3.11"
 djangorestframework==3.15.2 ; python_version >= "3.10" and python_version < "3.11"
@@ -50,31 +50,31 @@ docopt==0.6.2 ; python_version >= "3.10" and python_version < "3.11"
 email-validator==2.2.0 ; python_version >= "3.10" and python_version < "3.11"
 exceptiongroup==1.2.2 ; python_version >= "3.10" and python_version < "3.11"
 factory-boy==3.3.1 ; python_version >= "3.10" and python_version < "3.11"
-faker==30.8.2 ; python_version >= "3.10" and python_version < "3.11"
+faker==33.0.0 ; python_version >= "3.10" and python_version < "3.11"
 fasttext==0.9.3 ; python_version >= "3.10" and python_version < "3.11"
 flask-appbuilder==4.5.2 ; python_version >= "3.10" and python_version < "3.11"
 flask-babel==2.0.0 ; python_version >= "3.10" and python_version < "3.11"
 flask-caching==2.3.0 ; python_version >= "3.10" and python_version < "3.11"
-flask-jwt-extended==4.6.0 ; python_version >= "3.10" and python_version < "3.11"
+flask-jwt-extended==4.7.1 ; python_version >= "3.10" and python_version < "3.11"
 flask-limiter==3.8.0 ; python_version >= "3.10" and python_version < "3.11"
 flask-login==0.6.3 ; python_version >= "3.10" and python_version < "3.11"
 flask-session==0.5.0 ; python_version >= "3.10" and python_version < "3.11"
 flask-sqlalchemy==2.5.1 ; python_version >= "3.10" and python_version < "3.11"
 flask-wtf==1.2.2 ; python_version >= "3.10" and python_version < "3.11"
 flask==2.2.5 ; python_version >= "3.10" and python_version < "3.11"
-fonttools==4.54.1 ; python_version >= "3.10" and python_version < "3.11"
+fonttools==4.55.0 ; python_version >= "3.10" and python_version < "3.11"
 frozenlist==1.5.0 ; python_version >= "3.10" and python_version < "3.11"
 fsspec==2024.10.0 ; python_version >= "3.10" and python_version < "3.11"
 gensim==4.3.3 ; python_version >= "3.10" and python_version < "3.11"
 google-re2==1.1.20240702 ; python_version >= "3.10" and python_version < "3.11"
-googleapis-common-protos==1.65.0 ; python_version >= "3.10" and python_version < "3.11"
+googleapis-common-protos==1.66.0 ; python_version >= "3.10" and python_version < "3.11"
 greenlet==3.1.1 ; python_version >= "3.10" and (platform_machine == "aarch64" or platform_machine == "ppc64le" or platform_machine == "x86_64" or platform_machine == "amd64" or platform_machine == "AMD64" or platform_machine == "win32" or platform_machine == "WIN32") and python_version < "3.11"
-grpcio==1.67.1 ; python_version >= "3.10" and python_version < "3.11"
+grpcio==1.68.0 ; python_version >= "3.10" and python_version < "3.11"
 gunicorn==23.0.0 ; python_version >= "3.10" and python_version < "3.11"
 h11==0.14.0 ; python_version >= "3.10" and python_version < "3.11"
-httpcore==1.0.6 ; python_version >= "3.10" and python_version < "3.11"
+httpcore==1.0.7 ; python_version >= "3.10" and python_version < "3.11"
 httpx==0.27.2 ; python_version >= "3.10" and python_version < "3.11"
-hypothesis==6.116.0 ; python_version >= "3.10" and python_version < "3.11"
+hypothesis==6.119.3 ; python_version >= "3.10" and python_version < "3.11"
 idna==3.10 ; python_version >= "3.10" and python_version < "3.11"
 imageio==2.36.0 ; python_version >= "3.10" and python_version < "3.11"
 importlib-metadata==8.5.0 ; python_version >= "3.10" and python_version < "3.11"
@@ -109,21 +109,21 @@ more-itertools==10.5.0 ; python_version >= "3.10" and python_version < "3.11"
 mpmath==1.3.0 ; python_version >= "3.10" and python_version < "3.11"
 multidict==6.1.0 ; python_version >= "3.10" and python_version < "3.11"
 myhdl==0.11.49 ; python_version >= "3.10" and python_version < "3.11"
-mysqlclient==2.2.5 ; python_version >= "3.10" and python_version < "3.11"
+mysqlclient==2.2.6 ; python_version >= "3.10" and python_version < "3.11"
 networkx==3.4.2 ; python_version >= "3.10" and python_version < "3.11"
 nltk==3.9.1 ; python_version >= "3.10" and python_version < "3.11"
 numpy==1.26.4 ; python_version >= "3.10" and python_version < "3.11"
 opencv-python-headless==4.10.0.84 ; python_version >= "3.10" and python_version < "3.11"
-opentelemetry-api==1.28.0 ; python_version >= "3.10" and python_version < "3.11"
-opentelemetry-exporter-otlp-proto-common==1.28.0 ; python_version >= "3.10" and python_version < "3.11"
-opentelemetry-exporter-otlp-proto-grpc==1.28.0 ; python_version >= "3.10" and python_version < "3.11"
-opentelemetry-exporter-otlp-proto-http==1.28.0 ; python_version >= "3.10" and python_version < "3.11"
-opentelemetry-exporter-otlp==1.28.0 ; python_version >= "3.10" and python_version < "3.11"
-opentelemetry-proto==1.28.0 ; python_version >= "3.10" and python_version < "3.11"
-opentelemetry-sdk==1.28.0 ; python_version >= "3.10" and python_version < "3.11"
-opentelemetry-semantic-conventions==0.49b0 ; python_version >= "3.10" and python_version < "3.11"
+opentelemetry-api==1.28.2 ; python_version >= "3.10" and python_version < "3.11"
+opentelemetry-exporter-otlp-proto-common==1.28.2 ; python_version >= "3.10" and python_version < "3.11"
+opentelemetry-exporter-otlp-proto-grpc==1.28.2 ; python_version >= "3.10" and python_version < "3.11"
+opentelemetry-exporter-otlp-proto-http==1.28.2 ; python_version >= "3.10" and python_version < "3.11"
+opentelemetry-exporter-otlp==1.28.2 ; python_version >= "3.10" and python_version < "3.11"
+opentelemetry-proto==1.28.2 ; python_version >= "3.10" and python_version < "3.11"
+opentelemetry-sdk==1.28.2 ; python_version >= "3.10" and python_version < "3.11"
+opentelemetry-semantic-conventions==0.49b2 ; python_version >= "3.10" and python_version < "3.11"
 ordered-set==4.1.0 ; python_version >= "3.10" and python_version < "3.11"
-packaging==24.1 ; python_version >= "3.10" and python_version < "3.11"
+packaging==24.2 ; python_version >= "3.10" and python_version < "3.11"
 pandas==2.2.3 ; python_version >= "3.10" and python_version < "3.11"
 pathspec==0.12.1 ; python_version >= "3.10" and python_version < "3.11"
 pendulum==3.0.0 ; python_version >= "3.10" and python_version < "3.11"
@@ -139,7 +139,7 @@ pycosat==0.6.6 ; python_version >= "3.10" and python_version < "3.11"
 pycountry==24.6.1 ; python_version >= "3.10" and python_version < "3.11"
 pycparser==2.22 ; python_version >= "3.10" and python_version < "3.11"
 pygments==2.18.0 ; python_version >= "3.10" and python_version < "3.11"
-pyjwt==2.9.0 ; python_version >= "3.10" and python_version < "3.11"
+pyjwt==2.10.0 ; python_version >= "3.10" and python_version < "3.11"
 pymorphy2-dicts-ru==2.4.417127.4579844 ; python_version >= "3.10" and python_version < "3.11"
 pymorphy2==0.9.1 ; python_version >= "3.10" and python_version < "3.11"
 pymystem3==0.2.0 ; python_version >= "3.10" and python_version < "3.11"
@@ -153,7 +153,7 @@ python-slugify==8.0.4 ; python_version >= "3.10" and python_version < "3.11"
 pytz==2024.2 ; python_version >= "3.10" and python_version < "3.11"
 pyyaml==6.0.2 ; python_version >= "3.10" and python_version < "3.11"
 referencing==0.35.1 ; python_version >= "3.10" and python_version < "3.11"
-regex==2024.9.11 ; python_version >= "3.10" and python_version < "3.11"
+regex==2024.11.6 ; python_version >= "3.10" and python_version < "3.11"
 requests-toolbelt==1.0.0 ; python_version >= "3.10" and python_version < "3.11"
 requests==2.32.3 ; python_version >= "3.10" and python_version < "3.11"
 rfc3339-validator==0.1.4 ; python_version >= "3.10" and python_version < "3.11"
@@ -164,8 +164,8 @@ rsa==4.9 ; python_version >= "3.10" and python_version < "3.11"
 scikit-image==0.24.0 ; python_version >= "3.10" and python_version < "3.11"
 scikit-learn==1.5.2 ; python_version >= "3.10" and python_version < "3.11"
 scipy==1.13.1 ; python_version >= "3.10" and python_version < "3.11"
-setproctitle==1.3.3 ; python_version >= "3.10" and python_version < "3.11"
-setuptools==75.3.0 ; python_version >= "3.10" and python_version < "3.11"
+setproctitle==1.3.4 ; python_version >= "3.10" and python_version < "3.11"
+setuptools==75.6.0 ; python_version >= "3.10" and python_version < "3.11"
 shapely==2.0.6 ; python_version >= "3.10" and python_version < "3.11"
 six==1.16.0 ; python_version >= "3.10" and python_version < "3.11"
 smart-open==7.0.5 ; python_version >= "3.10" and python_version < "3.11"
@@ -175,7 +175,7 @@ soupsieve==2.6 ; python_version >= "3.10" and python_version < "3.11"
 sqlalchemy-jsonfield==1.0.2 ; python_version >= "3.10" and python_version < "3.11"
 sqlalchemy-utils==0.41.2 ; python_version >= "3.10" and python_version < "3.11"
 sqlalchemy==1.4.54 ; python_version >= "3.10" and python_version < "3.11"
-sqlparse==0.5.1 ; python_version >= "3.10" and python_version < "3.11"
+sqlparse==0.5.2 ; python_version >= "3.10" and python_version < "3.11"
 stepic-bioinformatics @ https://github.com/StepicOrg/stepik-bioinformatics/archive/1.0.0.zip#egg=stepic-bioinformatics==1.0.0 ; python_version >= "3.10" and python_version < "3.11"
 stepic-common @ https://github.com/StepicOrg/stepik-common/archive/1.0.0.zip#egg=stepic-common==1.0.0 ; python_version >= "3.10" and python_version < "3.11"
 stepic-utils @ https://github.com/hyperskill/stepik-utils/archive/1.3.0.zip#egg=stepic-utils==1.3.0 ; python_version >= "3.10" and python_version < "3.11"
@@ -187,7 +187,7 @@ termcolor==2.5.0 ; python_version >= "3.10" and python_version < "3.11"
 text-unidecode==1.3 ; python_version >= "3.10" and python_version < "3.11"
 threadpoolctl==3.5.0 ; python_version >= "3.10" and python_version < "3.11"
 tifffile==2024.9.20 ; python_version >= "3.10" and python_version < "3.11"
-tomli==2.0.2 ; python_version >= "3.10" and python_version < "3.11"
+tomli==2.1.0 ; python_version >= "3.10" and python_version < "3.11"
 toolz==1.0.0 ; python_version >= "3.10" and python_version < "3.11"
 tqdm==4.67.0 ; python_version >= "3.10" and python_version < "3.11"
 typing-extensions==4.12.2 ; python_version >= "3.10" and python_version < "3.11"
@@ -196,8 +196,8 @@ uc-micro-py==1.0.3 ; python_version >= "3.10" and python_version < "3.11"
 universal-pathlib==0.2.5 ; python_version >= "3.10" and python_version < "3.11"
 urllib3==2.2.3 ; python_version >= "3.10" and python_version < "3.11"
 werkzeug==2.2.3 ; python_version >= "3.10" and python_version < "3.11"
-wirerope==0.4.7 ; python_version >= "3.10" and python_version < "3.11"
+wirerope==0.4.8 ; python_version >= "3.10" and python_version < "3.11"
 wrapt==1.16.0 ; python_version >= "3.10" and python_version < "3.11"
 wtforms==3.2.1 ; python_version >= "3.10" and python_version < "3.11"
-yarl==1.17.1 ; python_version >= "3.10" and python_version < "3.11"
-zipp==3.20.2 ; python_version >= "3.10" and python_version < "3.11"
+yarl==1.18.0 ; python_version >= "3.10" and python_version < "3.11"
+zipp==3.21.0 ; python_version >= "3.10" and python_version < "3.11"