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R package for building and visualising GEM graphs automatically with aid of cellDesigner 4.4

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fastgraphGEM

This repository contains R scripts for package fastgraphGEM.

  • Last update: 2019-04-17

Overview

R package – fastgraphGEM is especially designed to draw and visualize the metabolic maps for GEMs models in large scale. Together with cellDesigner, fastgraphGEM also make it possible to map multi-layers omics data onto the metabolic map in an easy way.

Installation

To get the current development version from github:

# install.packages("devtools")
devtools::install_github("SysBioChalmers/fastgraphGEM")

Usage

The detailed tutorial to use fastgraphGEM could be found in https://github.com/SysBioChalmers/fastgraphGEM/tree/R_package_test.

Contributors

This repository is administered by Hongzhong Lu (@hongzhonglu), Division of Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology.

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R package for building and visualising GEM graphs automatically with aid of cellDesigner 4.4

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