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  1. bcbio/bcbio-nextgen Public

    Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

    Python 995 354

  2. DataBiosphere/toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 907 240

  3. broadinstitute/cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 1k 359

  4. BD2KGenomics/toil-rnaseq Public

    UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline

    Python 40 10

  5. workflow Public

    Workflow in bioinformatics

    Nextflow 9

  6. crawler Public

    for web crawler

    Jupyter Notebook

36 contributions in the last year

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Contribution activity

January 2025

Created 1 commit in 1 repository
Created 1 repository
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