Skip to content

Commit

Permalink
Update code blocks for R coloring
Browse files Browse the repository at this point in the history
  • Loading branch information
epartan authored Nov 14, 2024
1 parent 5185346 commit a99793d
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions homework/Day_2_answer_key.md
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@

**1. Using the code above as a template, run the over-reresentation analysis on the significantly down-regulated genes from the pseudobulk analysis.**

```
```r
# Extract significant results for down-regulated
sigDown <- dplyr::filter(res_tbl_noNAs, padj < 0.05, log2FoldChange < 0)
sigDown_genes <- as.character(sigDown$gene)
Expand All @@ -25,15 +25,15 @@ write.csv(cluster_summaryDown, "results/clusterProfiler_VSM_TNvsCold7_downregula

**How many significant terms do you find?**

```
```r
nrow(cluster_summaryDown)
```

There are 100 GO biological process terms that are downregulated in cold7 vs TN.

**What are some of the prominent biological processes that are observed?**

```
```r
head(cluster_summaryDown$Description)
```

Expand Down

0 comments on commit a99793d

Please sign in to comment.