Updates and new features #50

	name: Run unit tests

	on: [push, pull_request]

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.8", "3.12"]
	steps:
	- uses: actions/checkout@v2
	- uses: actions/cache@v2
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-${{ hashFiles('**/setup.py') }}
	restore-keys: \|
	${{ runner.os }}-pip-
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install .[rest_api,tests]
	- name: Run regular unit tests
	run: \|
	pytest protmapper/tests --cov=protmapper
	- name: Run CLI smoketests
	run: \|
	protmapper protmapper/tests/cli_input.csv output.csv --no_methionine_offset --no_orthology_mapping --no_isoform_mapping
	protmapper protmapper/tests/cli_input_peptide.csv output.csv --peptide

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