Update to version 1.1.2

griffithlab · Oct 31, 2018 · 17e1176 · 17e1176
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commit 17e1176
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Showing 3 changed files with 7 additions and 5 deletions.
diff --git a/docs/conf.py b/docs/conf.py
@@ -69,7 +69,7 @@
 # The short X.Y version.
 version = '1.1'
 # The full version, including alpha/beta/rc tags.
-release = '1.1.1'
+release = '1.1.2'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/docs/index.rst b/docs/index.rst
@@ -45,9 +45,11 @@ New in version |release|
 
 This is a hotfix release. It fixes the following issue(s):
 
-- In version 1.1 we updated VAFs to be fractions, rather than percentages. A
-  bug in this code change resulted in an error when using custom VAF cutoff values instead of the
-  default. This has now been fixed.
+- In version 1.1.0 we added a ``--pass-only`` flag to pVACseq that would
+  result in only variants with ``FILTER`` of ``PASS`` or ``.`` getting processed.
+  However, this option was not getting passed along to the pVACseq process
+  correctly, resulting in this option not taking effect. This hotfix release
+  fixes this issue and the ``--pass-only`` flag should now work as expected.
 
 New in version |version|
 ------------------------

diff --git a/setup.py b/setup.py
@@ -56,7 +56,7 @@
 
 setup(
     name="pvactools",
-    version="1.1.1",
+    version="1.1.2",
     packages=[
         "tools",
         "tools.pvacfuse",