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17 Open 10 Closed
17 Open 10 Closed
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Issues list

More modular plotting code for LASSO range scripts
#73 opened Feb 27, 2023 by jjc2718
Quantiles vs. linear "bins" in LASSO range box plots
#70 opened Feb 9, 2023 by jjc2718
Tweak LASSO coefficient range to be more uniform
#69 opened Feb 9, 2023 by jjc2718
Mutation prediction outstanding issues/updates
#53 opened Sep 8, 2022 by jjc2718
3 of 7 tasks
Look further into label imbalance research question
#38 opened Dec 1, 2020 by jjc2718
Coefficient stability: gene dropout/pathway aggregation experiments research question
#32 opened Oct 19, 2020 by jjc2718
1
Faster recognition of experiments that have already run (or skipped) enhancement New feature or request
#28 opened Oct 5, 2020 by jjc2718
Look into pan-cancer coefficients for cancer type research question
#23 opened Sep 21, 2020 by jjc2718
1
PCA of individual cancer types research question
#19 opened Aug 27, 2020 by jjc2718
Do highly mutated examples from explore_data script make sense? research question
#18 opened Aug 27, 2020 by jjc2718
Add statistical testing to compare single-cancer and pan-cancer results enhancement New feature or request research question
#15 opened Aug 24, 2020 by jjc2718
1
Save/load expression data as pickled dataframe instead of tsv file enhancement New feature or request
#13 opened Aug 21, 2020 by jjc2718
Change gene_features bool array to use built-in Pandas annotations enhancement New feature or request
#12 opened Aug 11, 2020 by jjc2718
Add general logging functionality enhancement New feature or request
#11 opened Aug 11, 2020 by jjc2718
Mutation burden prediction research question
#8 opened Aug 5, 2020 by jjc2718
Cross-validation for imbalanced label case bug Something isn't working
#4 opened Aug 4, 2020 by jjc2718
2
Revisit file path configuration refactoring
#3 opened Aug 3, 2020 by jjc2718
ProTip! Exclude everything labeled bug with -label:bug.