Skip to content

Commit

Permalink
Merge pull request #22 from greenelab/cgreene-patch-1
Browse files Browse the repository at this point in the history
  • Loading branch information
cgreene committed Aug 2, 2024
1 parent 2ff33fc commit 05095d5
Show file tree
Hide file tree
Showing 7 changed files with 49 additions and 49 deletions.
Binary file removed manuscript.docx
Binary file not shown.
24 changes: 12 additions & 12 deletions manuscript.html
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
<meta name="author" content="Jake Crawford" />
<meta name="author" content="Maria Chikina" />
<meta name="author" content="Casey S. Greene" />
<meta name="dcterms.date" content="2024-07-31" />
<meta name="dcterms.date" content="2024-08-02" />
<meta name="keywords" content="markdown, publishing, manubot" />
<title>Smaller models do not exhibit superior generalization performance</title>
<style>
Expand Down Expand Up @@ -52,11 +52,11 @@
<meta name="citation_title" content="Smaller models do not exhibit superior generalization performance" />
<meta property="og:title" content="Smaller models do not exhibit superior generalization performance" />
<meta property="twitter:title" content="Smaller models do not exhibit superior generalization performance" />
<meta name="dc.date" content="2024-07-31" />
<meta name="citation_publication_date" content="2024-07-31" />
<meta property="article:published_time" content="2024-07-31" />
<meta name="dc.modified" content="2024-07-31T14:24:08+00:00" />
<meta property="article:modified_time" content="2024-07-31T14:24:08+00:00" />
<meta name="dc.date" content="2024-08-02" />
<meta name="citation_publication_date" content="2024-08-02" />
<meta property="article:published_time" content="2024-08-02" />
<meta name="dc.modified" content="2024-08-02T17:26:26+00:00" />
<meta property="article:modified_time" content="2024-08-02T17:26:26+00:00" />
<meta name="dc.language" content="en-US" />
<meta name="citation_language" content="en-US" />
<meta name="dc.relation.ispartof" content="Manubot" />
Expand All @@ -81,9 +81,9 @@
<meta name="citation_fulltext_html_url" content="https://greenelab.github.io/generalization-manuscript/" />
<meta name="citation_pdf_url" content="https://greenelab.github.io/generalization-manuscript/manuscript.pdf" />
<link rel="alternate" type="application/pdf" href="https://greenelab.github.io/generalization-manuscript/manuscript.pdf" />
<link rel="alternate" type="text/html" href="https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/" />
<meta name="manubot_html_url_versioned" content="https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/" />
<meta name="manubot_pdf_url_versioned" content="https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/manuscript.pdf" />
<link rel="alternate" type="text/html" href="https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/" />
<meta name="manubot_html_url_versioned" content="https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/" />
<meta name="manubot_pdf_url_versioned" content="https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/manuscript.pdf" />
<meta property="og:type" content="article" />
<meta property="twitter:card" content="summary_large_image" />
<link rel="icon" type="image/png" sizes="192x192" href="https://manubot.org/favicon-192x192.png" />
Expand All @@ -100,10 +100,10 @@ <h1 class="title">Smaller models do not exhibit superior generalization performa
</header>
<p><small><em>
This manuscript
(<a href="https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/">permalink</a>)
(<a href="https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/">permalink</a>)
was automatically generated
from <a href="https://github.com/greenelab/generalization-manuscript/tree/ff622b0371d6892b91b482f810b38eca27ed8751">greenelab/generalization-manuscript@ff622b0</a>
on July 31, 2024.
from <a href="https://github.com/greenelab/generalization-manuscript/tree/918142f5bc420231c5864db45c493e80f63e4910">greenelab/generalization-manuscript@918142f</a>
on August 2, 2024.
</em></small></p>
<h2 id="authors">Authors</h2>
<ul>
Expand Down
24 changes: 12 additions & 12 deletions manuscript.md
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ keywords:
- publishing
- manubot
lang: en-US
date-meta: '2024-07-31'
date-meta: '2024-08-02'
author-meta:
- Jake Crawford
- Maria Chikina
Expand All @@ -21,11 +21,11 @@ header-includes: |
<meta name="citation_title" content="Smaller models do not exhibit superior generalization performance" />
<meta property="og:title" content="Smaller models do not exhibit superior generalization performance" />
<meta property="twitter:title" content="Smaller models do not exhibit superior generalization performance" />
<meta name="dc.date" content="2024-07-31" />
<meta name="citation_publication_date" content="2024-07-31" />
<meta property="article:published_time" content="2024-07-31" />
<meta name="dc.modified" content="2024-07-31T14:24:08+00:00" />
<meta property="article:modified_time" content="2024-07-31T14:24:08+00:00" />
<meta name="dc.date" content="2024-08-02" />
<meta name="citation_publication_date" content="2024-08-02" />
<meta property="article:published_time" content="2024-08-02" />
<meta name="dc.modified" content="2024-08-02T17:26:26+00:00" />
<meta property="article:modified_time" content="2024-08-02T17:26:26+00:00" />
<meta name="dc.language" content="en-US" />
<meta name="citation_language" content="en-US" />
<meta name="dc.relation.ispartof" content="Manubot" />
Expand All @@ -50,9 +50,9 @@ header-includes: |
<meta name="citation_fulltext_html_url" content="https://greenelab.github.io/generalization-manuscript/" />
<meta name="citation_pdf_url" content="https://greenelab.github.io/generalization-manuscript/manuscript.pdf" />
<link rel="alternate" type="application/pdf" href="https://greenelab.github.io/generalization-manuscript/manuscript.pdf" />
<link rel="alternate" type="text/html" href="https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/" />
<meta name="manubot_html_url_versioned" content="https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/" />
<meta name="manubot_pdf_url_versioned" content="https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/manuscript.pdf" />
<link rel="alternate" type="text/html" href="https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/" />
<meta name="manubot_html_url_versioned" content="https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/" />
<meta name="manubot_pdf_url_versioned" content="https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/manuscript.pdf" />
<meta property="og:type" content="article" />
<meta property="twitter:card" content="summary_large_image" />
<link rel="icon" type="image/png" sizes="192x192" href="https://manubot.org/favicon-192x192.png" />
Expand All @@ -74,10 +74,10 @@ manubot-clear-requests-cache: false

<small><em>
This manuscript
([permalink](https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/))
([permalink](https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/))
was automatically generated
from [greenelab/generalization-manuscript@ff622b0](https://github.com/greenelab/generalization-manuscript/tree/ff622b0371d6892b91b482f810b38eca27ed8751)
on July 31, 2024.
from [greenelab/generalization-manuscript@918142f](https://github.com/greenelab/generalization-manuscript/tree/918142f5bc420231c5864db45c493e80f63e4910)
on August 2, 2024.
</em></small>


Expand Down
Binary file modified manuscript.pdf
Binary file not shown.
16 changes: 8 additions & 8 deletions references.json
Original file line number Diff line number Diff line change
Expand Up @@ -9080,8 +9080,8 @@
"date-parts": [
[
"2024",
7,
31
8,
2
]
]
},
Expand Down Expand Up @@ -9128,8 +9128,8 @@
"date-parts": [
[
"2024",
7,
31
8,
2
]
]
},
Expand Down Expand Up @@ -9228,8 +9228,8 @@
"date-parts": [
[
"2024",
7,
31
8,
2
]
]
},
Expand Down Expand Up @@ -9281,8 +9281,8 @@
"date-parts": [
[
"2024",
7,
31
8,
2
]
]
},
Expand Down
10 changes: 5 additions & 5 deletions spelling-errors.txt
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ AUPR
bhfhgd
biomarker
BRAF
ccle
CCLE
cgreene
Chikina
CNV
Expand Down Expand Up @@ -37,7 +37,7 @@ mchikina
multicollinearity
NCI
NGS
nn
NN
nonlinearities
NRAS
omics
Expand All @@ -61,11 +61,11 @@ RTX
SARC
SKCM
subtypes
tcga
TCGA
TCGA’s
TGCT
THCA
thresholded
Thresholded
tradeoff
transcriptomics
tunable
Expand All @@ -76,4 +76,4 @@ underfitting
Vogelstein
wd
Wilcoxon
XGBoost
xgboost
24 changes: 12 additions & 12 deletions variables.json
Original file line number Diff line number Diff line change
Expand Up @@ -7,13 +7,13 @@
"manubot"
],
"lang": "en-US",
"date-meta": "2024-07-31",
"date-meta": "2024-08-02",
"author-meta": [
"Jake Crawford",
"Maria Chikina",
"Casey S. Greene"
],
"header-includes": "<!--\nManubot generated metadata rendered from header-includes-template.html.\nSuggest improvements at https://github.com/manubot/manubot/blob/main/manubot/process/header-includes-template.html\n-->\n<meta name=\"dc.format\" content=\"text/html\" />\n<meta property=\"og:type\" content=\"article\" />\n<meta name=\"dc.title\" content=\"Smaller models do not exhibit superior generalization performance\" />\n<meta name=\"citation_title\" content=\"Smaller models do not exhibit superior generalization performance\" />\n<meta property=\"og:title\" content=\"Smaller models do not exhibit superior generalization performance\" />\n<meta property=\"twitter:title\" content=\"Smaller models do not exhibit superior generalization performance\" />\n<meta name=\"dc.date\" content=\"2024-07-31\" />\n<meta name=\"citation_publication_date\" content=\"2024-07-31\" />\n<meta property=\"article:published_time\" content=\"2024-07-31\" />\n<meta name=\"dc.modified\" content=\"2024-07-31T14:24:08+00:00\" />\n<meta property=\"article:modified_time\" content=\"2024-07-31T14:24:08+00:00\" />\n<meta name=\"dc.language\" content=\"en-US\" />\n<meta name=\"citation_language\" content=\"en-US\" />\n<meta name=\"dc.relation.ispartof\" content=\"Manubot\" />\n<meta name=\"dc.publisher\" content=\"Manubot\" />\n<meta name=\"citation_journal_title\" content=\"Manubot\" />\n<meta name=\"citation_technical_report_institution\" content=\"Manubot\" />\n<meta name=\"citation_author\" content=\"Jake Crawford\" />\n<meta name=\"citation_author_institution\" content=\"Genomics and Computational Biology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA\" />\n<meta name=\"citation_author_orcid\" content=\"0000-0001-6207-0782\" />\n<meta name=\"twitter:creator\" content=\"@jjc2718\" />\n<meta name=\"citation_author\" content=\"Maria Chikina\" />\n<meta name=\"citation_author_institution\" content=\"Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA\" />\n<meta name=\"citation_author_orcid\" content=\"0000-0003-2550-5403\" />\n<meta name=\"citation_author\" content=\"Casey S. Greene\" />\n<meta name=\"citation_author_institution\" content=\"Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA\" />\n<meta name=\"citation_author_institution\" content=\"Center for Health AI, University of Colorado School of Medicine, Aurora, CO, USA\" />\n<meta name=\"citation_author_orcid\" content=\"0000-0001-8713-9213\" />\n<meta name=\"twitter:creator\" content=\"@GreeneScientist\" />\n<link rel=\"canonical\" href=\"https://greenelab.github.io/generalization-manuscript/\" />\n<meta property=\"og:url\" content=\"https://greenelab.github.io/generalization-manuscript/\" />\n<meta property=\"twitter:url\" content=\"https://greenelab.github.io/generalization-manuscript/\" />\n<meta name=\"citation_fulltext_html_url\" content=\"https://greenelab.github.io/generalization-manuscript/\" />\n<meta name=\"citation_pdf_url\" content=\"https://greenelab.github.io/generalization-manuscript/manuscript.pdf\" />\n<link rel=\"alternate\" type=\"application/pdf\" href=\"https://greenelab.github.io/generalization-manuscript/manuscript.pdf\" />\n<link rel=\"alternate\" type=\"text/html\" href=\"https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/\" />\n<meta name=\"manubot_html_url_versioned\" content=\"https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/\" />\n<meta name=\"manubot_pdf_url_versioned\" content=\"https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/manuscript.pdf\" />\n<meta property=\"og:type\" content=\"article\" />\n<meta property=\"twitter:card\" content=\"summary_large_image\" />\n<link rel=\"icon\" type=\"image/png\" sizes=\"192x192\" href=\"https://manubot.org/favicon-192x192.png\" />\n<link rel=\"mask-icon\" href=\"https://manubot.org/safari-pinned-tab.svg\" color=\"#ad1457\" />\n<meta name=\"theme-color\" content=\"#ad1457\" />\n<!-- end Manubot generated metadata -->\n",
"header-includes": "<!--\nManubot generated metadata rendered from header-includes-template.html.\nSuggest improvements at https://github.com/manubot/manubot/blob/main/manubot/process/header-includes-template.html\n-->\n<meta name=\"dc.format\" content=\"text/html\" />\n<meta property=\"og:type\" content=\"article\" />\n<meta name=\"dc.title\" content=\"Smaller models do not exhibit superior generalization performance\" />\n<meta name=\"citation_title\" content=\"Smaller models do not exhibit superior generalization performance\" />\n<meta property=\"og:title\" content=\"Smaller models do not exhibit superior generalization performance\" />\n<meta property=\"twitter:title\" content=\"Smaller models do not exhibit superior generalization performance\" />\n<meta name=\"dc.date\" content=\"2024-08-02\" />\n<meta name=\"citation_publication_date\" content=\"2024-08-02\" />\n<meta property=\"article:published_time\" content=\"2024-08-02\" />\n<meta name=\"dc.modified\" content=\"2024-08-02T17:26:26+00:00\" />\n<meta property=\"article:modified_time\" content=\"2024-08-02T17:26:26+00:00\" />\n<meta name=\"dc.language\" content=\"en-US\" />\n<meta name=\"citation_language\" content=\"en-US\" />\n<meta name=\"dc.relation.ispartof\" content=\"Manubot\" />\n<meta name=\"dc.publisher\" content=\"Manubot\" />\n<meta name=\"citation_journal_title\" content=\"Manubot\" />\n<meta name=\"citation_technical_report_institution\" content=\"Manubot\" />\n<meta name=\"citation_author\" content=\"Jake Crawford\" />\n<meta name=\"citation_author_institution\" content=\"Genomics and Computational Biology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA\" />\n<meta name=\"citation_author_orcid\" content=\"0000-0001-6207-0782\" />\n<meta name=\"twitter:creator\" content=\"@jjc2718\" />\n<meta name=\"citation_author\" content=\"Maria Chikina\" />\n<meta name=\"citation_author_institution\" content=\"Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA\" />\n<meta name=\"citation_author_orcid\" content=\"0000-0003-2550-5403\" />\n<meta name=\"citation_author\" content=\"Casey S. Greene\" />\n<meta name=\"citation_author_institution\" content=\"Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA\" />\n<meta name=\"citation_author_institution\" content=\"Center for Health AI, University of Colorado School of Medicine, Aurora, CO, USA\" />\n<meta name=\"citation_author_orcid\" content=\"0000-0001-8713-9213\" />\n<meta name=\"twitter:creator\" content=\"@GreeneScientist\" />\n<link rel=\"canonical\" href=\"https://greenelab.github.io/generalization-manuscript/\" />\n<meta property=\"og:url\" content=\"https://greenelab.github.io/generalization-manuscript/\" />\n<meta property=\"twitter:url\" content=\"https://greenelab.github.io/generalization-manuscript/\" />\n<meta name=\"citation_fulltext_html_url\" content=\"https://greenelab.github.io/generalization-manuscript/\" />\n<meta name=\"citation_pdf_url\" content=\"https://greenelab.github.io/generalization-manuscript/manuscript.pdf\" />\n<link rel=\"alternate\" type=\"application/pdf\" href=\"https://greenelab.github.io/generalization-manuscript/manuscript.pdf\" />\n<link rel=\"alternate\" type=\"text/html\" href=\"https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/\" />\n<meta name=\"manubot_html_url_versioned\" content=\"https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/\" />\n<meta name=\"manubot_pdf_url_versioned\" content=\"https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/manuscript.pdf\" />\n<meta property=\"og:type\" content=\"article\" />\n<meta property=\"twitter:card\" content=\"summary_large_image\" />\n<link rel=\"icon\" type=\"image/png\" sizes=\"192x192\" href=\"https://manubot.org/favicon-192x192.png\" />\n<link rel=\"mask-icon\" href=\"https://manubot.org/safari-pinned-tab.svg\" color=\"#ad1457\" />\n<meta name=\"theme-color\" content=\"#ad1457\" />\n<!-- end Manubot generated metadata -->\n",
"bibliography": [
"content/manual-references.json"
],
Expand All @@ -23,10 +23,10 @@
"manubot-clear-requests-cache": false
},
"manubot": {
"date": "2024-07-31",
"date_long": "July 31, 2024",
"generated": "2024-07-31T14:24:08+00:00",
"generated_date_long": "July 31, 2024",
"date": "2024-08-02",
"date_long": "August 2, 2024",
"generated": "2024-08-02T17:26:26+00:00",
"generated_date_long": "August 2, 2024",
"randomize_author_order": false,
"authors": [
{
Expand Down Expand Up @@ -96,15 +96,15 @@
"repo_slug": "greenelab/generalization-manuscript",
"repo_owner": "greenelab",
"repo_name": "generalization-manuscript",
"commit": "ff622b0371d6892b91b482f810b38eca27ed8751",
"triggering_commit": "ff622b0371d6892b91b482f810b38eca27ed8751",
"build_url": "https://github.com/greenelab/generalization-manuscript/commit/ff622b0371d6892b91b482f810b38eca27ed8751/checks",
"job_url": "https://github.com/greenelab/generalization-manuscript/actions/runs/10182057744"
"commit": "918142f5bc420231c5864db45c493e80f63e4910",
"triggering_commit": "918142f5bc420231c5864db45c493e80f63e4910",
"build_url": "https://github.com/greenelab/generalization-manuscript/commit/918142f5bc420231c5864db45c493e80f63e4910/checks",
"job_url": "https://github.com/greenelab/generalization-manuscript/actions/runs/10219589004"
},
"html_url": "https://greenelab.github.io/generalization-manuscript/",
"pdf_url": "https://greenelab.github.io/generalization-manuscript/manuscript.pdf",
"html_url_versioned": "https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/",
"pdf_url_versioned": "https://greenelab.github.io/generalization-manuscript/v/ff622b0371d6892b91b482f810b38eca27ed8751/manuscript.pdf",
"html_url_versioned": "https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/",
"pdf_url_versioned": "https://greenelab.github.io/generalization-manuscript/v/918142f5bc420231c5864db45c493e80f63e4910/manuscript.pdf",
"manubot_version": "0.5.5",
"rootstock_commit": "f3e0520060162f71f0950ea88d44de526d241ad1",
"manuscript_stats": {
Expand Down

0 comments on commit 05095d5

Please sign in to comment.