Update README.md

README.md

@@ -1,44 +1,44 @@
-Rasbian Installation of Shiny-Server and Python 3.6.0
-======================================================
+# Rasbian Installation of Shiny-Server and Python 3.6.0
+
 # Overview
 
-The current setup has been tested on Raspbian Stretch with a 
-Raspberry Pi 3 Model B.  
+The current setup has been tested on Raspbian Stretch with a Raspberry Pi 3 Model B.  
 
-These installations take a very long time on the raspberry pi.  Especially
-if you are using wifi.  At the time of writing I do not currently know how long each installation takes.
-It's recommended to do them one at a time or do the full installation overnight or start it in the morning.
+These installations take a very long time on the raspberry pi.  Especially if you are using wifi.  At the time of writing I do not currently know how long each installation takes. It's recommended to do them one at a time or do the full installation overnight or start it in the morning.
 
 # Full Installation
+
 This installation should be done overnight.
 All of the following software will be installed with master-install.sh:
+
 * APT packages
   * **R dependencies** 
-    * libxml2-dev libssl-dev libcurl4-openssl-dev libssh2-1-dev
-  * Python dependencies
-    * cmake
-    * build-essential tk-dev libncurses5-dev libncursesw5-dev libreadline6-dev libdb5.3-dev libgdbm-dev libsqlite3-dev libssl-dev libbz2-dev libexpat1-dev liblzma-dev zlib1g-dev
+    * `libxml2-dev`, `libssl-dev`, `libcurl4-openssl-dev`, `libssh2-1-dev`
+  * **Python dependencies**
+    * `cmake`
+    * `build-essential`, `tk-dev`, `libncurses5-dev`, `libncursesw5-dev`, `libreadline6-dev`, `libdb5.3-dev`, `libgdbm-dev`, `libsqlite3-dev`, `libssl-dev`, `libbz2-dev`, `libexpat1-dev`, `liblzma-dev`, `zlib1g-dev`
 * R and R packages
   * **CRAN**
-    * 'devtools', 'shiny', 'shinythemes', 'shinyBS', 'shinyjs', 'europepmc', 'DT', 'data.table', 'markdown', 'rclipboard', 'shinycssloaders', 'shinydashboard', 'shinyFiles', 'shinyFeedback','shinyHeatmaply', 'shinyjqui', 'shinyWidgets', 'bsplus', 'colourpicker'
+    * `devtools`, `shiny`, `shinythemes`, `shinyBS`, `shinyjs`, `europepmc`, `DT`, `data.table`, `markdown`, `rclipboard`, `shinycssloaders`, `shinydashboard`, 'shinyFiles', `shinyFeedback`,`shinyHeatmaply`, `shinyjqui`, `shinyWidgets`, `bsplus`, `colourpicker`
   * **GitHub**
-    * "cstubben/euPMC", "robear22890/shinyLP", "mkuhn/dict", 'ayayron/shinydnd', "Appsilon/shiny.semantic", "rstudio/miniUI", 'zachcp/msaR'
-  * Bioconductor
-    * "ggtree", "cummeRbund"
+    * `cstubben/euPMC`, `robear22890/shinyLP`, `mkuhn/dict`, `ayayron/shinydnd`, `Appsilon/shiny.semantic`, `rstudio/miniUI`, `zachcp/msaR`
+  * **Bioconductor**
+    * `ggtree`, `cummeRbund`
 * Shiny-Server
 * Python 3.6.2
   * **PyPI**
-    * pandas>=0.19.2
-      slacker==0.9.42
-      biopython==1.70
-      cookiecutter==1.5.1
-      sciluigi==0.9.5b6
+    * `pandas >= 0.19.2`
+    * `slacker == 0.9.42`
+    * `biopython == 1.70`
+    * `cookiecutter == 1.5.1`
+    * `sciluigi == 0.9.5b6`
 
 To install simply invoke the following on the command line:
 ```bash
 pi@raspberrypi $ . master-install.sh
 ```
-# Python 3.6.2 Installation ()
+# Python 3.6.2 Installation()
+
 _Python 3.6.2 installation on Rasbian was inspired by
 [this Gist](https://gist.github.com/dschep/24aa61672a2092246eaca2824400d37f)._
 
@@ -65,26 +65,24 @@ sudo apt-get -y upgrade
 
 Alternatively, you can rewrite the requirements.txt file to fit your own needs.
 
-**Note:** _At the time of writing this guide Python 3.6.2 was the latest release.  If a newer release is 
-available via the python [website](https://www.python.org/downloads/source/), then please make a pull
-request that changes the various file names and code.  You may also feel free to manually change them yourself._
+**Note:** _At the time of writing this guide Python 3.6.2 was the latest release.  If a newer release is available via the python [website](https://www.python.org/downloads/source/), then please make a pull request that changes the various file names and code.  You may also feel free to manually change them yourself._
 
 # R Installation
-To install R :
+To install R:
 ```bash
 pi@raspberrypi $ . master-R-install.sh
 ```
 
 # Shiny-Server Installation
+
 _Shiny-Server installation on Raspbian was inspired by R-Studio's guide [here](https://github.com/rstudio/shiny-server/wiki/Building-Shiny-Server-from-Source#installation)._
 
 To install Shiny-Server:
 ```bash
 pi@raspberrypi $ . master-shiny-server-install.sh
 ```
 
-After shiny server is installed it will automatically run on reboot.  In order to
-remove this functionality comment out the following lines in the shiny-server.service file:
+After shiny server is installed it will automatically run on reboot. In order to remove this functionality comment out the following lines in the shiny-server.service file:
 ```bash
 [Service]
 Type=simple
@@ -95,11 +93,10 @@ ExecReload=/bin/kill -HUP $MAINPID
 ExecStopPost=/bin/sleep 5
 RestartSec=1
 
-
 [Install]
 WantedBy=multi-user.target
 ```
 
 # Coming Soon... R-Studio-Server Installation
 
-Currently R-studio has been difficult to install.  I've tried on several different occasions and used several different methods.
+Currently R-studio has been difficult to install. I've tried on several different occasions and used several different methods.