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Adds the citeproc filter to the pandoc converter.

There are several PRs for it this feature already. However, I think
simply adding `--citeproc` is the cleanest way to enable this feature,
with the option to flesh it out later, e.g., in #7529.

Some PRs and issues attempt adding more config options to Hugo which
indirectly configure pandoc, but I think simply configuring Pandoc via
Pandoc itself is simpler, as it is already possible with two YAML
blocks -- one for Hugo, and one for Pandoc:

    ---
    title: This is the Hugo YAML block
    ---
    ---
    bibliography: assets/pandoc-yaml-block-bibliography.bib
    ...
    Document content with @citation!

There are other useful options, e.g., #4800 attempts to use `nocite`,
which works out of the box with this PR:

    ---
    title: This is the Hugo YAML block
    ---
    ---
    bibliography: assets/pandoc-yaml-block-bibliography.bib
    nocite: |
      @*
    ...
    Document content with no citations but a full bibliography:

    ## Bibliography

Other useful options are `csl: ...` and `link-citations: true`, which
set the path to a custom CSL file and create HTML links between the
references and the bibliography.

The following issues and PRs are related:

- Add support for parsing citations and Jupyter notebooks via Pandoc and/or Goldmark extension #6101
  Bundles multiple requests, this PR tackles citation parsing.

- WIP: Bibliography with Pandoc #4800
  Passes the frontmatter to Pandoc and still uses
  `--filter pandoc-citeproc` instead of `--citeproc`.
- Allow configuring Pandoc #7529
  That PR is much more extensive and might eventually supersede this PR,
  but I think --bibliography and --citeproc should be independent
  options (--bibliography should be optional and citeproc can always be
  specified).
- Pandoc - allow citeproc extension to be invoked, with bibliography. #8610
  Similar to #7529, #8610 adds a new config option to Hugo.
  I think passing --citeproc and letting the users decide on the
  metadata they want to pass to pandoc is better, albeit uglier.
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shoeffner committed Jul 12, 2022
1 parent 223bf28 commit a25e950
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62 changes: 57 additions & 5 deletions docs/content/en/content-management/formats.md
Original file line number Diff line number Diff line change
Expand Up @@ -47,21 +47,21 @@ Hugo passes reasonable default arguments to these external helpers by default:

- `asciidoctor`: `--no-header-footer -`
- `rst2html`: `--leave-comments --initial-header-level=2`
- `pandoc`: `--mathjax`
- `pandoc`: `--mathjax` and, for pandoc >= 2.11, `--citeproc`

{{% warning "Performance of External Helpers" %}}
Because additional formats are external commands, generation performance will rely heavily on the performance of the external tool you are using. As this feature is still in its infancy, feedback is welcome.
{{% /warning %}}

### External Helper AsciiDoc

[AsciiDoc](https://github.com/asciidoc/asciidoc) implementation EOLs in Jan 2020 and is no longer supported.
AsciiDoc development is being continued under [Asciidoctor](https://github.com/asciidoctor). The format AsciiDoc
[AsciiDoc](https://github.com/asciidoc/asciidoc) implementation EOLs in Jan 2020 and is no longer supported.
AsciiDoc development is being continued under [Asciidoctor](https://github.com/asciidoctor). The format AsciiDoc
remains of course. Please continue with the implementation Asciidoctor.

### External Helper Asciidoctor

The Asciidoctor community offers a wide set of tools for the AsciiDoc format that can be installed additionally to Hugo.
The Asciidoctor community offers a wide set of tools for the AsciiDoc format that can be installed additionally to Hugo.
[See the Asciidoctor docs for installation instructions](https://asciidoctor.org/docs/install-toolchain/). Make sure that also all
optional extensions like `asciidoctor-diagram` or `asciidoctor-html5s` are installed if required.

Expand Down Expand Up @@ -109,13 +109,65 @@ Example of how to set extensions and attributes:
my-attribute-name = "my value"
```

In a complex Asciidoctor environment it is sometimes helpful to debug the exact call to your external helper with all
In a complex Asciidoctor environment it is sometimes helpful to debug the exact call to your external helper with all
parameters. Run Hugo with `-v`. You will get an output like

```
INFO 2019/12/22 09:08:48 Rendering book-as-pdf.adoc with C:\Ruby26-x64\bin\asciidoctor.bat using asciidoc args [--no-header-footer -r asciidoctor-html5s -b html5s -r asciidoctor-diagram --base-dir D:\prototypes\hugo_asciidoc_ddd\docs -a outdir=D:\prototypes\hugo_asciidoc_ddd\build -] ...
```

### External Helper Pandoc

[Pandoc](https://pandoc.org) is a universal document converter and can be used to convert markdown files.
In Hugo, Pandoc can be used for LaTeX-style math (the `--mathjax` command line option is provided):

```
---
title: Math document
---
Some inline math: $a^2 + b^2 = c^2$.
```

This will render in your HTML as:

```
<p>Some inline math: <span class="math inline">\(a^2 + b^2 = c^2\)</span></p>
```
You will have to [add MathJax](https://www.mathjax.org/#gettingstarted) to your template to properly render the math.

For **Pandoc >= 2.11**, you can use [citations](https://pandoc.org/MANUAL.html#extension-citations).
One way is to employ [BibTeX files](https://en.wikibooks.org/wiki/LaTeX/Bibliography_Management#BibTeX) to cite:

```
---
title: Citation document
---
---
bibliography: assets/bibliography.bib
...
This is a citation: @Doe2022
```

Note that Hugo will **not** pass its metadata YAML block to Pandoc; however, it will pass the **second** meta data block, denoted with `---` and `...` to Pandoc.
Thus, all Pandoc settings should go there.

You can also add all elements from a bibliography file (without citing them explicitly) using:

```
---
title: My Publications
---
---
bibliography: assets/bibliography.bib
nocite: |
@*
...
```

It is also possible to provide a custom [CSL style](https://citationstyles.org/authors/) by passing `csl: path-to-style.csl` as a Pandoc option.


## Learn Markdown

Markdown syntax is simple enough to learn in a single sitting. The following are excellent resources to get you up and running:
Expand Down
74 changes: 72 additions & 2 deletions markup/pandoc/convert.go
Original file line number Diff line number Diff line change
Expand Up @@ -15,12 +15,16 @@
package pandoc

import (
"bytes"
"strconv"
"strings"
"sync"

"github.com/gohugoio/hugo/common/hexec"
"github.com/gohugoio/hugo/htesting"
"github.com/gohugoio/hugo/identity"
"github.com/gohugoio/hugo/markup/internal"

"github.com/gohugoio/hugo/markup/converter"
"github.com/gohugoio/hugo/markup/internal"
)

// Provider is the package entry point.
Expand Down Expand Up @@ -65,6 +69,9 @@ func (c *pandocConverter) getPandocContent(src []byte, ctx converter.DocumentCon
return src, nil
}
args := []string{"--mathjax"}
if supportsCitations(c.cfg) {
args = append(args[:], "--citeproc")
}
return internal.ExternallyRenderContent(c.cfg, ctx, src, binaryName, args)
}

Expand All @@ -77,6 +84,69 @@ func getPandocBinaryName() string {
return ""
}

type pandocVersion struct {
major, minor int64
}

func (left pandocVersion) greaterThanOrEqual(right pandocVersion) bool {
return left.major > right.major || (left.major == right.major && left.minor >= right.minor)
}

var versionOnce sync.Once
var foundPandocVersion pandocVersion

// getPandocVersion parses the pandoc version output
func getPandocVersion(cfg converter.ProviderConfig) (pandocVersion, error) {
var err error

versionOnce.Do(func() {
argsv := []any{"--version"}

var out bytes.Buffer
argsv = append(argsv, hexec.WithStdout(&out))

cmd, err := cfg.Exec.New(pandocBinary, argsv...)
if err != nil {
cfg.Logger.Errorf("Could not call pandoc: %v", err)
foundPandocVersion = pandocVersion{0, 0}
return
}

err = cmd.Run()
if err != nil {
cfg.Logger.Errorf("%s --version: %v", pandocBinary, err)
foundPandocVersion = pandocVersion{0, 0}
return
}

outbytes := bytes.Replace(out.Bytes(), []byte("\r"), []byte(""), -1)
output := strings.Split(string(outbytes), "\n")[0]
// Split, e.g., "pandoc 2.5" into 2 and 5 and convert them to integers
versionStrings := strings.Split(strings.Split(output, " ")[1], ".")
majorVersion, err := strconv.ParseInt(versionStrings[0], 10, 64)
if err != nil {
println(err)
}
minorVersion, err := strconv.ParseInt(versionStrings[1], 10, 64)
if err != nil {
println(err)
}
foundPandocVersion = pandocVersion{majorVersion, minorVersion}
})

return foundPandocVersion, err
}

// SupportsCitations returns true for pandoc versions >= 2.11, which include citeproc
func supportsCitations(cfg converter.ProviderConfig) bool {
if Supports() {
foundPandocVersion, err := getPandocVersion(cfg)
supportsCitations := foundPandocVersion.greaterThanOrEqual(pandocVersion{2, 11}) && err == nil
return supportsCitations
}
return false
}

// Supports returns whether Pandoc is installed on this computer.
func Supports() bool {
hasBin := getPandocBinaryName() != ""
Expand Down
142 changes: 138 additions & 4 deletions markup/pandoc/convert_test.go
Original file line number Diff line number Diff line change
Expand Up @@ -25,18 +25,152 @@ import (
qt "github.com/frankban/quicktest"
)

func TestConvert(t *testing.T) {
func setupTestConverter(t *testing.T) (*qt.C, converter.Converter, converter.ProviderConfig) {
if !Supports() {
t.Skip("pandoc not installed")
}
c := qt.New(t)
sc := security.DefaultConfig
sc.Exec.Allow = security.NewWhitelist("pandoc")
p, err := Provider.New(converter.ProviderConfig{Exec: hexec.New(sc), Logger: loggers.NewErrorLogger()})
cfg := converter.ProviderConfig{Exec: hexec.New(sc), Logger: loggers.NewErrorLogger()}
p, err := Provider.New(cfg)
c.Assert(err, qt.IsNil)
conv, err := p.New(converter.DocumentContext{})
c.Assert(err, qt.IsNil)
b, err := conv.Convert(converter.RenderContext{Src: []byte("testContent")})
return c, conv, cfg
}

func TestConvert(t *testing.T) {
c, conv, _ := setupTestConverter(t)
output, err := conv.Convert(converter.RenderContext{Src: []byte("testContent")})
c.Assert(err, qt.IsNil)
c.Assert(string(output.Bytes()), qt.Equals, "<p>testContent</p>\n")
}

func runCiteprocTest(t *testing.T, content string, expected string) {
c, conv, cfg := setupTestConverter(t)
if !supportsCitations(cfg) {
t.Skip("pandoc does not support citations")
}
output, err := conv.Convert(converter.RenderContext{Src: []byte(content)})
c.Assert(err, qt.IsNil)
c.Assert(string(b.Bytes()), qt.Equals, "<p>testContent</p>\n")
c.Assert(string(output.Bytes()), qt.Equals, expected)
}

func TestGetPandocVersionCallTwice(t *testing.T) {
c, _, cfg := setupTestConverter(t)

version1, err1 := getPandocVersion(cfg)
version2, err2 := getPandocVersion(cfg)
c.Assert(version1, qt.Equals, version2)
c.Assert(err1, qt.IsNil)
c.Assert(err2, qt.IsNil)
}

func TestPandocVersionEquality(t *testing.T) {
c := qt.New(t)
v1 := pandocVersion{1, 0}
v2 := pandocVersion{2, 0}
v3 := pandocVersion{2, 2}
v4 := pandocVersion{1, 2}
v5 := pandocVersion{2, 11}

// 1 >= 1 -> true
c.Assert(v1.greaterThanOrEqual(v1), qt.IsTrue)

// 1 >= 2 -> false, 2 >= 1 -> tru
c.Assert(v1.greaterThanOrEqual(v2), qt.IsFalse)
c.Assert(v2.greaterThanOrEqual(v1), qt.IsTrue)

// 2.0 >= 2.2 -> false, 2.2 >= 2.0 -> true
c.Assert(v2.greaterThanOrEqual(v3), qt.IsFalse)
c.Assert(v3.greaterThanOrEqual(v2), qt.IsTrue)

// 2.2 >= 1.2 -> true, 1.2 >= 2.2 -> false
c.Assert(v3.greaterThanOrEqual(v4), qt.IsTrue)
c.Assert(v4.greaterThanOrEqual(v3), qt.IsFalse)

// 2.11 >= 2.2 -> true, 2.2 >= 2.11 -> false
c.Assert(v5.greaterThanOrEqual(v3), qt.IsTrue)
c.Assert(v3.greaterThanOrEqual(v5), qt.IsFalse)
}

func TestCiteprocWithHugoMeta(t *testing.T) {
content := `
---
title: Test
published: 2022-05-30
---
testContent
`
expected := "<p>testContent</p>\n"
runCiteprocTest(t, content, expected)
}

func TestCiteprocWithPandocMeta(t *testing.T) {
content := `
---
---
---
...
testContent
`
expected := "<p>testContent</p>\n"
runCiteprocTest(t, content, expected)
}

func TestCiteprocWithBibliography(t *testing.T) {
content := `
---
---
---
bibliography: testdata/bibliography.bib
...
testContent
`
expected := "<p>testContent</p>\n"
runCiteprocTest(t, content, expected)
}

func TestCiteprocWithExplicitCitation(t *testing.T) {
content := `
---
---
---
bibliography: testdata/bibliography.bib
...
@Doe2022
`
expected := `<p><span class="citation" data-cites="Doe2022">Doe and Mustermann
(2022)</span></p>
<div id="refs" class="references csl-bib-body hanging-indent"
role="doc-bibliography">
<div id="ref-Doe2022" class="csl-entry" role="doc-biblioentry">
Doe, Jane, and Max Mustermann. 2022. <span>“A Treatise on Hugo
Tests.”</span> <em>Hugo Websites</em>.
</div>
</div>
`
runCiteprocTest(t, content, expected)
}

func TestCiteprocWithNocite(t *testing.T) {
content := `
---
---
---
bibliography: testdata/bibliography.bib
nocite: |
@*
...
`
expected := `<div id="refs" class="references csl-bib-body hanging-indent"
role="doc-bibliography">
<div id="ref-Doe2022" class="csl-entry" role="doc-biblioentry">
Doe, Jane, and Max Mustermann. 2022. <span>“A Treatise on Hugo
Tests.”</span> <em>Hugo Websites</em>.
</div>
</div>
`
runCiteprocTest(t, content, expected)
}
6 changes: 6 additions & 0 deletions markup/pandoc/testdata/bibliography.bib
Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
@article{Doe2022,
author = "Jane Doe and Max Mustermann",
title = "A Treatise on Hugo Tests",
journal = "Hugo Websites",
year = "2022",
}

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