Release/0.14.0 (#507)

* Update changelog * Use python3 for .sync-zenodo-metadata.py * Update .zenodo.json file * Update pre-commit configuration * Bump up to version 0.14.0. * Skip pre-checks in favor of pre-commit CI. * Use tokens. * Update comment. Co-authored-by: Bradley Dice <[email protected]>
glotzerlab · Apr 27, 2021 · 620b34f · 620b34f
1 parent 6cf7227
commit 620b34f
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Showing 11 changed files with 30 additions and 33 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -158,19 +158,11 @@ workflows:
   version: 2
   test:
     jobs:
-      - pre-checks
-      - linux-python-39:
-          requires:
-            - pre-checks
-      - linux-python-38:
-          requires:
-            - pre-checks
-      - linux-python-37:
-          requires:
-            - pre-checks
-      - linux-python-36-oldest:
-          requires:
-            - pre-checks
+#     - pre-checks
+      - linux-python-39
+      - linux-python-38
+      - linux-python-37
+      - linux-python-36-oldest
       - linux-python-39-signac-15:
           requires:
             - linux-python-39

diff --git a/.circleci/deploy.bash b/.circleci/deploy.bash
@@ -6,8 +6,8 @@ set -u
 python -m pip install --progress-bar off --user -U -r requirements/requirements-test.txt
 python -m pip install --progress-bar off --user -U twine wheel setuptools
 
-# PYPI_USERNAME - (Required) Username for the publisher's account on PyPI
-# PYPI_PASSWORD - (Required, Secret) Password for the publisher's account on PyPI
+# PYPI_API_TOKEN - (Required, Secret) Token for the publisher's account on PyPI
+# TEST_PYPI_API_TOKEN - (Required, Secret) Token for the publisher's account on TestPyPI
 
 cat << EOF > ~/.pypirc
 [distutils]
@@ -16,13 +16,13 @@ index-servers=
     testpypi
 
 [pypi]
-username: ${PYPI_USERNAME}
-password: ${PYPI_PASSWORD}
+username: __token__
+password: ${PYPI_API_TOKEN}
 
 [testpypi]
 repository: https://test.pypi.org/legacy/
-username: ${PYPI_USERNAME}
-password: ${PYPI_PASSWORD}
+username: __token__
+password: ${TEST_PYPI_API_TOKEN}
 EOF
 
 # Create wheels and source distribution

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -20,7 +20,7 @@ repos:
       - id: isort
         exclude: '(?:mistune/.*)'
   - repo: https://github.com/psf/black
-    rev: '21.4b0'
+    rev: '21.4b1'
     hooks:
       - id: black
         exclude: '(?:mistune/.*)'

diff --git a/.sync-zenodo-metadata.py b/.sync-zenodo-metadata.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python3
 """Synchronize authors and contributor metadata.
 
 This script synchronizes the metadata provided in the CITATION.cff and

diff --git a/.zenodo.json b/.zenodo.json
@@ -106,6 +106,11 @@
         {
             "affiliation": "",
             "name": "Ange-Desire Gnabro"
+        },
+        {
+            "affiliation": "University of Michigan",
+            "name": "Charlotte Zhao",
+            "orcid": "0000-0003-4915-1064"
         }
     ],
     "creators": [
@@ -160,5 +165,5 @@
     },
     "title": "signac-flow",
     "upload_type": "software",
-    "version": "0.13.0"
+    "version": "0.14.0"
 }
diff --git a/CITATION.cff b/CITATION.cff
@@ -2,7 +2,7 @@
 ---
 cff-version: "1.0.3"
 title: signac-flow
-version: 0.13.0
+version: 0.14.0
 abstract: |
     The signac-flow tool provides the basic components to set up simple to complex workflows for projects as part of the signac framework. That includes the definition of data pipelines, execution of data space operations and the submission of operations to high-performance super computers.
 authors:

diff --git a/changelog.txt b/changelog.txt
@@ -8,7 +8,7 @@ The numbers in brackets denote the related GitHub issue and/or pull request.
 Version 0.14
 ============
 
-[0.14.0] -- 2021-xx-xx
+[0.14.0] -- 2021-04-27
 ----------------------
 
 Added
@@ -17,12 +17,12 @@ Added
 - Documentation for all directives (#480).
 - Defined validators for the ``fork`` directive (#480).
 - Submission summary now appears in ``FlowProject`` status output, showing the number of queued, running, unknown statuses. (#472, #488).
-- Status overview now shows the number of jobs with incomplete operations and totals for the label overviews (#501).
+- Status overview now shows the number of jobs with incomplete operations and totals for the label overviews (#481, #501).
 
 Changed
 +++++++
 
-- Renamed TorqueEnvironment and related classes to PBSEnvironment (#491).
+- Renamed TorqueEnvironment and related classes to PBSEnvironment (#388, #491).
 - LSF and SLURM schedulers will appear to be present if the respective commands ``bjobs -V`` or ``sbatch --version`` exit with a non-zero error code (#498).
 - Only known JobStatus values will be written to the project document, to save space and writing time (#503).
 
@@ -32,12 +32,12 @@ Fixed
 - Strictly enforce that operation functions cannot be used as condition functions (and vice-versa) and prevent the registration of two operations with the same name (#496).
 - Changed default value of ``status_parallelization`` to none, to avoid bugs in user code caused by thread parallelism and overhead in process parallelism (#486).
 - Memory directives are converted to an integer number of gigabytes or megabytes in submission scripts (#482, #484).
-- Fixed behavior of ``--only-incomplete-operations`` (#501).
+- Fixed behavior of ``--only-incomplete-operations`` (#481, #501).
 
 Removed
 +++++++
 
-- Removed ``FlowProject.add_operation`` (#487).
+- Removed ``FlowProject.add_operation`` (#479, #487).
 - Removed deprecated ``--walltime`` argument (#478).
 - Removed deprecated ``flow.run`` interface (#478).
 - Removed deprecated ``FlowProject.export_job_statuses`` (#478).

diff --git a/doc/conf.py b/doc/conf.py
@@ -77,9 +77,9 @@ def __getattr__(cls, name):
 # built documents.
 #
 # The short X.Y version.
-version = "0.13.0"
+version = "0.14.0"
 # The full version, including alpha/beta/rc tags.
-release = "0.13.0"
+release = "0.14.0"
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/flow/version.py b/flow/version.py
@@ -3,6 +3,6 @@
 # This software is licensed under the BSD 3-Clause License.
 """Define the signac-flow version."""
 
-__version__ = "0.13.0"
+__version__ = "0.14.0"
 
 __all__ = ["__version__"]
diff --git a/setup.cfg b/setup.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.13.0
+current_version = 0.14.0
 commit = True
 tag = False
 message = Bump up to version {new_version}.

diff --git a/setup.py b/setup.py
@@ -30,7 +30,7 @@
 
 setup(
     name="signac-flow",
-    version="0.13.0",
+    version="0.14.0",
     packages=find_packages(),
     include_package_data=True,
     zip_safe=True,