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Merge pull request #26250 from geneontology/vw-11-10-2023
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closes #26239; closes #26249; closes #26133
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ValWood authored Oct 26, 2023
2 parents 321deff + 6f55d6f commit d920f25
Showing 1 changed file with 30 additions and 12 deletions.
42 changes: 30 additions & 12 deletions src/ontology/go-edit.obo
Original file line number Diff line number Diff line change
@@ -104427,7 +104427,7 @@ is_a: GO:0032502 ! developmental process
is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: part_of GO:0009653 ! anatomical structure morphogenesis
relationship: part_of GO:0032989 ! cellular component morphogenesis
relationship: part_of GO:0032989 ! cellular anatomical entity morphogenesis

[Term]
id: GO:0010928
@@ -186942,22 +186942,26 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i

[Term]
id: GO:0032989
name: cellular component morphogenesis
name: cellular anatomical entity morphogenesis
namespace: biological_process
def: "The process in which cellular structures, including whole cells or cell parts, are generated and organized." [GOC:dph, GOC:mah, GOC:tb]
def: "The process in which a cellular entity is generated and organized. A cellular entity has granularity above the level of a protein complex but below that of an anatomical system." [GOC:dph, GOC:mah, GOC:tb]
subset: goslim_pir
synonym: "cellular component morphogenesis" EXACT []
synonym: "cellular structure morphogenesis" EXACT [GOC:dph, GOC:tb]
intersection_of: GO:0009653 ! anatomical structure morphogenesis
intersection_of: results_in_morphogenesis_of GO:0005575 ! cellular_component
intersection_of: results_in_morphogenesis_of GO:0110165 ! cellular anatomical entity
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25496" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26249" xsd:anyURI

[Term]
id: GO:0032990
name: cell part morphogenesis
name: obsolete cell part morphogenesis
namespace: biological_process
def: "The process in which the anatomical structures of a cell part are generated and organized." [GOC:mah]
intersection_of: GO:0009653 ! anatomical structure morphogenesis
intersection_of: results_in_morphogenesis_of GO:0110165 ! cellular anatomical entity
def: "OBSOLETE. The process in which the anatomical structures of a cell part are generated and organized." [GOC:mah]
comment: The reason for obsoletion is that this term was an unnecessary grouping term.
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26249" xsd:anyURI
is_obsolete: true
replaced_by: GO:0032989

[Term]
id: GO:0032991
@@ -244658,6 +244662,7 @@ id: GO:0043414
name: macromolecule methylation
namespace: biological_process
def: "The covalent attachment of a methyl residue to one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule." [GOC:go_curators]
subset: gocheck_do_not_annotate
is_a: GO:0032259 ! methylation
is_a: GO:0043170 ! macromolecule metabolic process
is_a: GO:0043412 ! macromolecule modification
@@ -368484,7 +368489,6 @@ namespace: biological_process
def: "The process in which the anatomical structures of a mitochondrion are generated and organized." [GOC:mah]
comment: Note that this term is intended for annotation of gene products involved in mitochondrial shape changes associated with development; an example is the morphogenesis of the Nebenkern during spermatogenesis.
is_a: GO:0007005 ! mitochondrion organization
is_a: GO:0032990 ! cell part morphogenesis
created_by: mah
creation_date: 2009-04-24T10:54:19Z

@@ -403094,16 +403098,19 @@ namespace: biological_process
def: "Any cellular metabolic process involving nucleic acids." [GOC:dph, GOC:tb]
intersection_of: GO:0008152 ! metabolic process
intersection_of: has_primary_input_or_output CHEBI:33696 ! nucleic acid
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26133" xsd:anyURI
created_by: tb
creation_date: 2010-04-07T10:18:47Z

[Term]
id: GO:0090305
name: nucleic acid phosphodiester bond hydrolysis
name: obsolete nucleic acid phosphodiester bond hydrolysis
namespace: biological_process
def: "The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis." [GOC:dph, GOC:tb]
def: "OBSOLETE. The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis." [GOC:dph, GOC:tb]
comment: The reason for obsoletion is that this term represents a molecular function.
synonym: "nucleic acid cleavage" EXACT [GOC:dph, GOC:tb]
is_a: GO:0090304 ! nucleic acid metabolic process
is_obsolete: true
replaced_by: GO:0090304
created_by: tb
creation_date: 2010-04-07T10:26:30Z

@@ -459387,6 +459394,17 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
created_by: vw
creation_date: 2023-07-14T13:19:39Z

[Term]
id: GO:0180022
name: RQC-trigger complex
namespace: cellular_component
def: "A ribosome disassembly complex which dissociates stalled ribsome subunits as part of the ribosome quality control pathway. RQT complex is composed of a RNA helicase-family proteiny yeast Rqt2 (human ASCC3), a ubiquitin-binding protein yeast Rqt3, (human ASCC2), and Rqt4 (Human TRIP4)." [PMID:28757607, PMID:32099016]
synonym: "RQT complex" EXACT []
is_a: GO:0032991 ! protein-containing complex
property_value: creation_dat "2023-10-11T11:40:08Z" xsd:dateTime
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26239" xsd:anyURI
created_by: vw

[Term]
id: GO:0198738
name: cell-cell signaling by wnt

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