Merge pull request #26533 from geneontology/26464_30_11_23

closes #25263; closes #26464; closes 26267

src/ontology/go-edit.obo

@@ -61298,19 +61298,17 @@ relationship: part_of GO:0010467 ! gene expression
 
 [Term]
 id: GO:0006407
-name: rRNA export from nucleus
+name: obsolete rRNA export from nucleus
 namespace: biological_process
-def: "The directed movement of rRNA from the nucleus to the cytoplasm; the rRNA is usually in the form of ribonucleoproteins." [GOC:ma, GOC:mah]
+def: "OBSOLETE. The directed movement of rRNA from the nucleus to the cytoplasm; the rRNA is usually in the form of ribonucleoproteins." [GOC:ma, GOC:mah]
+comment: The reason for obsoletion is that this term was added in error (rRNA is only exported as part of the pre ribosome).
 synonym: "rRNA export from cell nucleus" EXACT []
 synonym: "rRNA export out of nucleus" EXACT []
 synonym: "rRNA transport from nucleus to cytoplasm" EXACT []
 synonym: "rRNA-nucleus export" EXACT []
-intersection_of: GO:0006810 ! transport
-intersection_of: has_primary_input CHEBI:18111 ! ribosomal RNA
-intersection_of: has_target_end_location GO:0005829 ! cytosol
-intersection_of: has_target_start_location GO:0031981 ! nuclear lumen
-intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope
-relationship: part_of GO:0042254 ! ribosome biogenesis
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25263" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0000054
 
 [Term]
 id: GO:0006408
@@ -375346,6 +375344,7 @@ synonym: "snRNA methyltransferase activity" RELATED [GOC:rl]
 xref: RHEA:67620 {source="skos:narrowMatch"}
 xref: RHEA:67624 {source="skos:narrowMatch"}
 is_a: GO:0008173 ! RNA methyltransferase activity
+is_a: GO:0008757 ! S-adenosylmethionine-dependent methyltransferase activity
 relationship: part_of GO:0036261 ! 7-methylguanosine cap hypermethylation
 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25717" xsd:anyURI
 created_by: mah