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[create-pull-request] automated change (#28643)
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Co-authored-by: balhoff <[email protected]>
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ontobot and balhoff authored Aug 2, 2024
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2 changes: 1 addition & 1 deletion docs/patterns/multi_organism_process.md
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Expand Up @@ -29,7 +29,7 @@ TODO

## Equivalent to

`{process}` and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [PATO_0002486](http://purl.obolibrary.org/obo/PATO_0002486))
`{process}` and ([bearer of](http://purl.obolibrary.org/obo/RO_0000053) some [PATO_0002486](http://purl.obolibrary.org/obo/PATO_0002486))



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2 changes: 1 addition & 1 deletion docs/patterns/single_organism_process.md
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Expand Up @@ -29,7 +29,7 @@ TODO

## Equivalent to

`{process}` and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [single organismal process quality](http://purl.obolibrary.org/obo/PATO_0002487))
`{process}` and ([bearer of](http://purl.obolibrary.org/obo/RO_0000053) some [single organismal process quality](http://purl.obolibrary.org/obo/PATO_0002487))



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2 changes: 1 addition & 1 deletion src/design_patterns/binding.tsv
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Expand Up @@ -188,7 +188,7 @@ http://purl.obolibrary.org/obo/GO_0034186 apolipoprotein A-I binding http://purl
http://purl.obolibrary.org/obo/GO_0034185 apolipoprotein binding http://purl.obolibrary.org/obo/CHEBI_39015 apolipoprotein
http://purl.obolibrary.org/obo/GO_2001085 arabinogalactan binding http://purl.obolibrary.org/obo/CHEBI_27569 arabinogalactan
http://purl.obolibrary.org/obo/GO_2001068 arabinoxylan binding http://purl.obolibrary.org/obo/CHEBI_28427 arabinoxylan
http://purl.obolibrary.org/obo/GO_0050544 arachidonic acid binding http://purl.obolibrary.org/obo/CHEBI_32395 arachidonate
http://purl.obolibrary.org/obo/GO_0050544 arachidonate binding http://purl.obolibrary.org/obo/CHEBI_32395 arachidonate
http://purl.obolibrary.org/obo/GO_0034618 arginine binding http://purl.obolibrary.org/obo/CHEBI_32696 argininium(1+)
http://purl.obolibrary.org/obo/GO_0017162 aryl hydrocarbon receptor binding http://purl.obolibrary.org/obo/PR_000003858 aryl hydrocarbon receptor
http://purl.obolibrary.org/obo/GO_1904067 ascr#2 binding http://purl.obolibrary.org/obo/CHEBI_78812 ascr#2
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1 change: 0 additions & 1 deletion src/design_patterns/biosynthetic_process.tsv
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Expand Up @@ -149,7 +149,6 @@ http://purl.obolibrary.org/obo/GO_0046380 N-acetylneuraminate biosynthetic proce
http://purl.obolibrary.org/obo/GO_0052709 N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process http://purl.obolibrary.org/obo/CHEBI_15781 N(alpha),N(alpha),N(alpha)-trimethyl-L-histidine
http://purl.obolibrary.org/obo/GO_0009435 NAD biosynthetic process http://purl.obolibrary.org/obo/CHEBI_13389 NAD
http://purl.obolibrary.org/obo/GO_0006741 NADP biosynthetic process http://purl.obolibrary.org/obo/CHEBI_58349 NADP(3-)
http://purl.obolibrary.org/obo/GO_0018425 O3-(N-acetylglucosamine-1-phosphoryl)-L-serine biosynthetic process http://purl.obolibrary.org/obo/CHEBI_67036 O-(N-acetylglucosamine-1-phosphonatooxy)-L-serine(1-)
http://purl.obolibrary.org/obo/GO_0140875 PR-toxin biosynthetic process http://purl.obolibrary.org/obo/CHEBI_7883 PR-toxin
http://purl.obolibrary.org/obo/GO_0006556 S-adenosylmethionine biosynthetic process http://purl.obolibrary.org/obo/CHEBI_59789 S-adenosyl-L-methionine zwitterion
http://purl.obolibrary.org/obo/GO_0016144 S-glycoside biosynthetic process http://purl.obolibrary.org/obo/CHEBI_35275 S-glycosyl compound
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7 changes: 0 additions & 7 deletions src/design_patterns/involved_in_x_y.tsv
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Expand Up @@ -36,7 +36,6 @@ http://purl.obolibrary.org/obo/GO_0000082 G1/S transition of mitotic cell cycle
http://purl.obolibrary.org/obo/GO_0000086 G2/M transition of mitotic cell cycle http://purl.obolibrary.org/obo/GO_0044839 cell cycle G2/M phase transition http://purl.obolibrary.org/obo/GO_0000278 mitotic cell cycle
http://purl.obolibrary.org/obo/GO_1901481 L-glutamate import involved in cellular response to nitrogen starvation http://purl.obolibrary.org/obo/GO_0051938 L-glutamate import http://purl.obolibrary.org/obo/GO_0006995 cellular response to nitrogen starvation
http://purl.obolibrary.org/obo/GO_0016256 N-glycan processing to lysosome http://purl.obolibrary.org/obo/GO_0006491 N-glycan processing http://purl.obolibrary.org/obo/GO_0006622 protein targeting to lysosome
http://purl.obolibrary.org/obo/GO_0071891 N-terminal peptidyl-proline dimethylation involved in translation http://purl.obolibrary.org/obo/GO_0018016 N-terminal peptidyl-proline dimethylation http://purl.obolibrary.org/obo/GO_0006412 translation
http://purl.obolibrary.org/obo/GO_0002288 NK T cell activation involved in immune response http://purl.obolibrary.org/obo/GO_0051132 NK T cell activation http://purl.obolibrary.org/obo/GO_0006955 immune response
http://purl.obolibrary.org/obo/GO_0002289 NK T cell proliferation involved in immune response http://purl.obolibrary.org/obo/GO_0001866 NK T cell proliferation http://purl.obolibrary.org/obo/GO_0006955 immune response
http://purl.obolibrary.org/obo/GO_0061314 Notch signaling involved in heart development http://purl.obolibrary.org/obo/GO_0007219 Notch signaling pathway http://purl.obolibrary.org/obo/GO_0007507 heart development
Expand Down Expand Up @@ -741,8 +740,6 @@ http://purl.obolibrary.org/obo/GO_0061004 pattern specification involved in kidn
http://purl.obolibrary.org/obo/GO_0061227 pattern specification involved in mesonephros development http://purl.obolibrary.org/obo/GO_0007389 pattern specification process http://purl.obolibrary.org/obo/GO_0001823 mesonephros development
http://purl.obolibrary.org/obo/GO_0072268 pattern specification involved in metanephros development http://purl.obolibrary.org/obo/GO_0007389 pattern specification process http://purl.obolibrary.org/obo/GO_0001656 metanephros development
http://purl.obolibrary.org/obo/GO_0039017 pattern specification involved in pronephros development http://purl.obolibrary.org/obo/GO_0007389 pattern specification process http://purl.obolibrary.org/obo/GO_0048793 pronephros development
http://purl.obolibrary.org/obo/GO_1901260 peptidyl-lysine hydroxylation involved in bacterial-type EF-P lysine modification http://purl.obolibrary.org/obo/GO_0017185 peptidyl-lysine hydroxylation http://purl.obolibrary.org/obo/GO_0072580 bacterial-type EF-P lysine modification
http://purl.obolibrary.org/obo/GO_1901920 peptidyl-tyrosine dephosphorylation involved in activation of protein kinase activity http://purl.obolibrary.org/obo/GO_0035335 peptidyl-tyrosine dephosphorylation http://purl.obolibrary.org/obo/GO_0032147 activation of protein kinase activity
http://purl.obolibrary.org/obo/GO_0006911 phagocytosis, engulfment http://purl.obolibrary.org/obo/GO_0099024 plasma membrane invagination http://purl.obolibrary.org/obo/GO_0006909 phagocytosis
http://purl.obolibrary.org/obo/GO_0006910 phagocytosis, recognition http://purl.obolibrary.org/obo/GO_0008037 cell recognition http://purl.obolibrary.org/obo/GO_0006909 phagocytosis
http://purl.obolibrary.org/obo/GO_0090387 phagolysosome assembly involved in apoptotic cell clearance http://purl.obolibrary.org/obo/GO_0001845 phagolysosome assembly http://purl.obolibrary.org/obo/GO_0043277 apoptotic cell clearance
Expand All @@ -759,9 +756,6 @@ http://purl.obolibrary.org/obo/GO_0048784 pigment biosynthetic process involved
http://purl.obolibrary.org/obo/GO_0043324 pigment metabolic process involved in developmental pigmentation http://purl.obolibrary.org/obo/GO_0042440 pigment metabolic process http://purl.obolibrary.org/obo/GO_0048066 developmental pigmentation
http://purl.obolibrary.org/obo/GO_0043475 pigment metabolic process involved in pigment accumulation http://purl.obolibrary.org/obo/GO_0042440 pigment metabolic process http://purl.obolibrary.org/obo/GO_0043476 pigment accumulation
http://purl.obolibrary.org/obo/GO_0043474 pigment metabolic process involved in pigmentation http://purl.obolibrary.org/obo/GO_0042440 pigment metabolic process http://purl.obolibrary.org/obo/GO_0043473 pigmentation
http://purl.obolibrary.org/obo/GO_0003402 planar cell polarity pathway involved in axis elongation http://purl.obolibrary.org/obo/GO_0060071 Wnt signaling pathway, planar cell polarity pathway http://purl.obolibrary.org/obo/GO_0003401 axis elongation
http://purl.obolibrary.org/obo/GO_0090179 planar cell polarity pathway involved in neural tube closure http://purl.obolibrary.org/obo/GO_0060071 Wnt signaling pathway, planar cell polarity pathway http://purl.obolibrary.org/obo/GO_0001843 neural tube closure
http://purl.obolibrary.org/obo/GO_0061347 planar cell polarity pathway involved in outflow tract morphogenesis http://purl.obolibrary.org/obo/GO_0060071 Wnt signaling pathway, planar cell polarity pathway http://purl.obolibrary.org/obo/GO_0003151 outflow tract morphogenesis
http://purl.obolibrary.org/obo/GO_1902088 plant-type cell wall loosening involved in abscission http://purl.obolibrary.org/obo/GO_0009828 plant-type cell wall loosening http://purl.obolibrary.org/obo/GO_0009838 abscission
http://purl.obolibrary.org/obo/GO_0009831 plant-type cell wall modification involved in multidimensional cell growth http://purl.obolibrary.org/obo/GO_0009827 plant-type cell wall modification http://purl.obolibrary.org/obo/GO_0009825 multidimensional cell growth
http://purl.obolibrary.org/obo/GO_1905588 plant-type cell wall modification involved in stomatal movement http://purl.obolibrary.org/obo/GO_0009827 plant-type cell wall modification http://purl.obolibrary.org/obo/GO_0010118 stomatal movement
Expand All @@ -780,7 +774,6 @@ http://purl.obolibrary.org/obo/GO_2000526 positive regulation of glycoprotein bi
http://purl.obolibrary.org/obo/GO_0001988 positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure http://purl.obolibrary.org/obo/GO_0010460 positive regulation of heart rate http://purl.obolibrary.org/obo/GO_0001982 baroreceptor response to decreased systemic arterial blood pressure
http://purl.obolibrary.org/obo/GO_1902110 positive regulation of mitochondrial membrane permeability involved in apoptotic process http://purl.obolibrary.org/obo/GO_0035794 positive regulation of mitochondrial membrane permeability http://purl.obolibrary.org/obo/GO_0006915 apoptotic process
http://purl.obolibrary.org/obo/GO_2000777 positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia http://purl.obolibrary.org/obo/GO_0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process http://purl.obolibrary.org/obo/GO_0071456 cellular response to hypoxia
http://purl.obolibrary.org/obo/GO_1902433 positive regulation of water channel activity involved in maintenance of lens transparency http://purl.obolibrary.org/obo/GO_1902429 positive regulation of water channel activity http://purl.obolibrary.org/obo/GO_0036438 maintenance of lens transparency
http://purl.obolibrary.org/obo/GO_0048942 posterior lateral line nerve glial cell morphogenesis involved in differentiation http://purl.obolibrary.org/obo/GO_0000902 cell morphogenesis http://purl.obolibrary.org/obo/GO_0048941 posterior lateral line nerve glial cell development
http://purl.obolibrary.org/obo/GO_0060878 pouch outgrowth involved in semicircular canal formation http://purl.obolibrary.org/obo/GO_0060571 morphogenesis of an epithelial fold http://purl.obolibrary.org/obo/GO_0060876 semicircular canal formation
http://purl.obolibrary.org/obo/GO_1902299 pre-replicative complex assembly involved in cell cycle DNA replication http://purl.obolibrary.org/obo/GO_0036388 pre-replicative complex assembly http://purl.obolibrary.org/obo/GO_0044786 cell cycle DNA replication
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2 changes: 1 addition & 1 deletion src/design_patterns/metabolic_process.tsv
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Expand Up @@ -281,7 +281,7 @@ http://purl.obolibrary.org/obo/GO_0031221 arabinan metabolic process http://purl
http://purl.obolibrary.org/obo/GO_0019566 arabinose metabolic process http://purl.obolibrary.org/obo/CHEBI_22599 arabinose
http://purl.obolibrary.org/obo/GO_0010416 arabinoxylan-containing compound metabolic process http://purl.obolibrary.org/obo/CHEBI_22603 arabinoxylans
http://purl.obolibrary.org/obo/GO_0051161 arabitol metabolic process http://purl.obolibrary.org/obo/CHEBI_22605 arabinitol
http://purl.obolibrary.org/obo/GO_0019369 arachidonic acid metabolic process http://purl.obolibrary.org/obo/CHEBI_32395 arachidonate
http://purl.obolibrary.org/obo/GO_0019369 arachidonate metabolic process http://purl.obolibrary.org/obo/CHEBI_32395 arachidonate
http://purl.obolibrary.org/obo/GO_0006525 arginine metabolic process http://purl.obolibrary.org/obo/CHEBI_32696 argininium(1+)
http://purl.obolibrary.org/obo/GO_0000053 argininosuccinate metabolic process http://purl.obolibrary.org/obo/CHEBI_57472 (N(omega)-L-arginino)succinate(1-)
http://purl.obolibrary.org/obo/GO_0009072 aromatic amino acid metabolic process http://purl.obolibrary.org/obo/CHEBI_33856 aromatic amino acid
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