Skip to content

Commit

Permalink
obsoleted terms for #25865
Browse files Browse the repository at this point in the history
  • Loading branch information
@pgaudet
pgaudet committed Nov 23, 2023
1 parent e2d939d commit 737b918
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions src/ontology/go-edit.obo
View file
Original file line number Diff line number Diff line change
Expand Up @@ -426884,7 +426884,7 @@ is_a: GO:0016706 ! 2-oxoglutarate-dependent dioxygenase activity
id: GO:0102114
name: obsolete caprate dehydroxylase activity
namespace: molecular_function
def: "OBSOLETE. Catalysis of the reaction: decanoate + NADPH + O2 + H+ = 10-hydroxycaprate + NADP + H2O." [EC:1.14.13.-, GOC:pz]
def: "OBSOLETE. Catalysis of the reaction: decanoate + NADPH + O2 + H+ = 10-hydroxycaprate + NADP + H2O." [GOC:pz]
comment: This term was obsoleted because it represents a specific substrate and is beyond the scope of GO MF.
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24662" xsd:anyURI
is_obsolete: true
Expand All @@ -426902,7 +426902,7 @@ is_a: GO:0016880 ! acid-ammonia (or amide) ligase activity
id: GO:0102116
name: obsolete laurate hydroxylase activity
namespace: molecular_function
def: "OBSOLETE. Catalysis of the reaction: dodecanoate + NADPH + O2 + H+ = 11-hydroxylaurate + NADP + H2O." [EC:1.14.13.-, GOC:pz]
def: "OBSOLETE. Catalysis of the reaction: dodecanoate + NADPH + O2 + H+ = 11-hydroxylaurate + NADP + H2O." [GOC:pz]
comment: This term was obsoleted because it represents a specific substrate and is beyond the scope of GO MF.
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24662" xsd:anyURI
is_obsolete: true
Expand Down Expand Up @@ -426982,7 +426982,7 @@ is_a: GO:0016705 ! oxidoreductase activity, acting on paired donors, with incorp
id: GO:0102126
name: coniferyl aldehyde 5-hydroxylase activity
namespace: molecular_function
def: "Catalysis of the reaction: H+ + coniferyl aldehyde + NADPH + O2 = 5-hydroxy-coniferaldehyde + NADP + H2O." [EC:1.14.13.-, GOC:pz]
def: "Catalysis of the reaction: H+ + coniferyl aldehyde + NADPH + O2 = 5-hydroxy-coniferaldehyde + NADP + H2O." [GOC:pz]
xref: MetaCyc:RXN-1142
is_a: GO:0016709 ! oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen

Expand Down

1 comment on commit 737b918

@github-actions
Copy link

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/go.owl
  • Version IRI: http://purl.obolibrary.org/obo/go/releases/2023-11-23/go.owl
  • Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/go.owl
  • Version IRI: http://purl.obolibrary.org/obo/go/releases/2023-11-23/go.owl
  • Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

(S)-lactate 2-kinase activity http://purl.obolibrary.org/obo/GO_0043841

Removed

Added

4alpha-formyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol-4alpha-methyl oxidase activity http://purl.obolibrary.org/obo/GO_0102186

Removed

Added

4alpha-formyl-5alpha-cholesta-7,24-dien-3beta-ol-4alpha-methyl oxidase activity http://purl.obolibrary.org/obo/GO_0102190

Removed

Added

4alpha-hydroxymethyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol-4alpha-methyl oxidase activity http://purl.obolibrary.org/obo/GO_0102185

Removed

Added

4alpha-hydroxymethyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-ergost-24(241)-en-3beta-ol-4alpha-methyl oxidase activity http://purl.obolibrary.org/obo/GO_0102172

Removed

Added

4alpha-hydroxymethyl-stigmasta-7,24(241)-dien-3beta-ol-methyl oxidase activity http://purl.obolibrary.org/obo/GO_0102180

Removed

Added

4alpha-methyl-5alpha-cholesta-7,24-dien-3beta-ol-4alpha-methyl oxidase activity http://purl.obolibrary.org/obo/GO_0102188

Removed

Added

6-hydroxy-3-methyl-2-oxo-1,2-dihydroquinoline 6-monooxygenase activity http://purl.obolibrary.org/obo/GO_0018641

Removed

6-oxocampestanol hydroxylase activity http://purl.obolibrary.org/obo/GO_0102729

Removed

Added

7-oxatyphasterol synthase activity http://purl.obolibrary.org/obo/GO_0102138

Removed

Added

9,10-dihydroxystearate hydroxylase activity http://purl.obolibrary.org/obo/GO_0103006

Removed

Added

9,10-epoxystearate hydroxylase activity http://purl.obolibrary.org/obo/GO_0103004

Removed

Added

N,N'-diacetylchitobiose synthase activity http://purl.obolibrary.org/obo/GO_0102278

Removed

Added

N-formylmethionylaminoacyl-tRNA deformylase activity http://purl.obolibrary.org/obo/GO_0047410

Removed

Added

beta-carotene oxygenase activity http://purl.obolibrary.org/obo/GO_0102783

Removed

Added

coniferyl aldehyde 5-hydroxylase activity http://purl.obolibrary.org/obo/GO_0102126

Removed

Added

cycloartenol 4alpha-methyl oxidase activity http://purl.obolibrary.org/obo/GO_0102184

Removed

Added

dTDP-L-rhamnose synthetase activity http://purl.obolibrary.org/obo/GO_0102030

Removed

Added

lysine-tRNA(Pyl) ligase activity http://purl.obolibrary.org/obo/GO_0050562

Removed

Added

obsolete 4alpha-hydroxymethyl-5alpha-cholesta-7,24-dien-3beta-ol-4alpha-methyl oxidase activity http://purl.obolibrary.org/obo/GO_0102189

Removed

Added

obsolete caprate dehydroxylase activity http://purl.obolibrary.org/obo/GO_0102114

Removed

Added

obsolete laurate hydroxylase activity http://purl.obolibrary.org/obo/GO_0102116

Removed

Added

sulfur oxygenase reductase activity http://purl.obolibrary.org/obo/GO_0043826

Removed

Added

sulfur oxygenase/reductase activity http://purl.obolibrary.org/obo/GO_0033755

Removed

Added

Please sign in to comment.