[create-pull-request] automated change (#28630)

Co-authored-by: balhoff <[email protected]>
geneontology · Jul 29, 2024 · 4b998ab · 4b998ab
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diff --git a/docs/patterns/protein_complex_by_activity.md b/docs/patterns/protein_complex_by_activity.md
@@ -29,7 +29,7 @@ TODO
 
 ## Equivalent to
 
-[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991)  and ([capable_of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`)
+[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991)  and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`)
 
 
 

diff --git a/src/design_patterns/catabolic_process.tsv b/src/design_patterns/catabolic_process.tsv
@@ -123,7 +123,6 @@ http://purl.obolibrary.org/obo/GO_0006559	L-phenylalanine catabolic process	http
 http://purl.obolibrary.org/obo/GO_0019504	L-proline betaine catabolic process	http://purl.obolibrary.org/obo/CHEBI_35280	L-proline betaine
 http://purl.obolibrary.org/obo/GO_0006565	L-serine catabolic process	http://purl.obolibrary.org/obo/CHEBI_33384	L-serine zwitterion
 http://purl.obolibrary.org/obo/GO_0042850	L-sorbose catabolic process	http://purl.obolibrary.org/obo/CHEBI_17266	L-sorbose
-http://purl.obolibrary.org/obo/GO_0051160	L-xylitol catabolic process	http://purl.obolibrary.org/obo/CHEBI_17151	xylitol
 http://purl.obolibrary.org/obo/GO_0032326	Mo-molybdopterin cofactor catabolic process	http://purl.obolibrary.org/obo/CHEBI_21437	Mo-molybdopterin cofactor
 http://purl.obolibrary.org/obo/GO_1900550	N',N'',N'''-triacetylfusarinine C catabolic process	http://purl.obolibrary.org/obo/CHEBI_60481	N',N'',N'''-triacetylfusarinine C
 http://purl.obolibrary.org/obo/GO_2001299	N(omega),N(omega)-dimethyl-L-arginine catabolic process	http://purl.obolibrary.org/obo/CHEBI_58326	N(omega),N(omega)-dimethyl-L-argininium(1+)
@@ -915,6 +914,7 @@ http://purl.obolibrary.org/obo/GO_1903228	xanthosine catabolic process	http://pu
 http://purl.obolibrary.org/obo/GO_0042178	xenobiotic catabolic process	http://purl.obolibrary.org/obo/GOCHE_35703	substance with xenobiotic role
 http://purl.obolibrary.org/obo/GO_0045493	xylan catabolic process	http://purl.obolibrary.org/obo/CHEBI_37166	xylan
 http://purl.obolibrary.org/obo/GO_0042184	xylene catabolic process	http://purl.obolibrary.org/obo/CHEBI_27338	xylene
+http://purl.obolibrary.org/obo/GO_0051160	xylitol catabolic process	http://purl.obolibrary.org/obo/CHEBI_17151	xylitol
 http://purl.obolibrary.org/obo/GO_2000899	xyloglucan catabolic process	http://purl.obolibrary.org/obo/CHEBI_18233	xyloglucan
 http://purl.obolibrary.org/obo/GO_0005998	xylulose catabolic process	http://purl.obolibrary.org/obo/CHEBI_27353	xylulose
 http://purl.obolibrary.org/obo/GO_1901829	zeaxanthin bis(beta-D-glucoside) catabolic process	http://purl.obolibrary.org/obo/CHEBI_63067	zeaxanthin bis(beta-D-glucoside)

diff --git a/src/design_patterns/metabolic_process.tsv b/src/design_patterns/metabolic_process.tsv
@@ -174,7 +174,6 @@ http://purl.obolibrary.org/obo/GO_0006558	L-phenylalanine metabolic process	http
 http://purl.obolibrary.org/obo/GO_0019502	L-proline betaine metabolic process	http://purl.obolibrary.org/obo/CHEBI_35280	L-proline betaine
 http://purl.obolibrary.org/obo/GO_0006563	L-serine metabolic process	http://purl.obolibrary.org/obo/CHEBI_33384	L-serine zwitterion
 http://purl.obolibrary.org/obo/GO_0019312	L-sorbose metabolic process	http://purl.obolibrary.org/obo/CHEBI_17266	L-sorbose
-http://purl.obolibrary.org/obo/GO_0051164	L-xylitol metabolic process	http://purl.obolibrary.org/obo/CHEBI_17151	xylitol
 http://purl.obolibrary.org/obo/GO_1902759	Mo(VI)-molybdopterin cytosine dinucleotide metabolic process	http://purl.obolibrary.org/obo/CHEBI_71308	Mo(VI)-molybdopterin cytosine dinucleotide(2-)
 http://purl.obolibrary.org/obo/GO_0019720	Mo-molybdopterin cofactor metabolic process	http://purl.obolibrary.org/obo/CHEBI_21437	Mo-molybdopterin cofactor
 http://purl.obolibrary.org/obo/GO_1900549	N',N'',N'''-triacetylfusarinine C metabolic process	http://purl.obolibrary.org/obo/CHEBI_60481	N',N'',N'''-triacetylfusarinine C
@@ -1258,6 +1257,7 @@ http://purl.obolibrary.org/obo/GO_1903227	xanthosine metabolic process	http://pu
 http://purl.obolibrary.org/obo/GO_0006805	xenobiotic metabolic process	http://purl.obolibrary.org/obo/GOCHE_35703	substance with xenobiotic role
 http://purl.obolibrary.org/obo/GO_0045491	xylan metabolic process	http://purl.obolibrary.org/obo/CHEBI_37166	xylan
 http://purl.obolibrary.org/obo/GO_0018948	xylene metabolic process	http://purl.obolibrary.org/obo/CHEBI_27338	xylene
+http://purl.obolibrary.org/obo/GO_0051164	xylitol metabolic process	http://purl.obolibrary.org/obo/CHEBI_17151	xylitol
 http://purl.obolibrary.org/obo/GO_0010398	xylogalacturonan metabolic process	http://purl.obolibrary.org/obo/CHEBI_27343	xylogalacturonan
 http://purl.obolibrary.org/obo/GO_0010411	xyloglucan metabolic process	http://purl.obolibrary.org/obo/CHEBI_18233	xyloglucan
 http://purl.obolibrary.org/obo/GO_0051167	xylulose 5-phosphate metabolic process	http://purl.obolibrary.org/obo/CHEBI_27354	xylulose 5-phosphate

diff --git a/src/design_patterns/positive_regulation.tsv b/src/design_patterns/positive_regulation.tsv
@@ -15,6 +15,7 @@ http://purl.obolibrary.org/obo/GO_1900952	positive regulation of 18-methylnonade
 http://purl.obolibrary.org/obo/GO_1900955	positive regulation of 18-methylnonadec-1-ene metabolic process	http://purl.obolibrary.org/obo/GO_1900880	18-methylnonadec-1-ene metabolic process
 http://purl.obolibrary.org/obo/GO_1905870	positive regulation of 3'-UTR-mediated mRNA stabilization	http://purl.obolibrary.org/obo/GO_0070935	3'-UTR-mediated mRNA stabilization
 http://purl.obolibrary.org/obo/GO_0141170	positive regulation of 5-methylcytosine DNA demethylation, direct 5-methylcytosine excision pathway	http://purl.obolibrary.org/obo/GO_0141169	chromosomal 5-methylcytosine DNA demethylation, direct 5-methylcytosine excision pathway
+http://purl.obolibrary.org/obo/GO_0160199	positive regulation of 7-methylguanosine mRNA capping	http://purl.obolibrary.org/obo/GO_0006370	7-methylguanosine mRNA capping
 http://purl.obolibrary.org/obo/GO_0140973	positive regulation of AIM2 inflammasome complex assembly	http://purl.obolibrary.org/obo/GO_0140970	AIM2 inflammasome complex assembly
 http://purl.obolibrary.org/obo/GO_1904719	positive regulation of AMPA glutamate receptor clustering	http://purl.obolibrary.org/obo/GO_0097113	AMPA glutamate receptor clustering
 http://purl.obolibrary.org/obo/GO_2000969	positive regulation of AMPA receptor activity	http://purl.obolibrary.org/obo/GO_0004971	AMPA glutamate receptor activity

diff --git a/src/ontology/imports/go-pattern-conformance.ttl b/src/ontology/imports/go-pattern-conformance.ttl
@@ -39312,6 +39312,9 @@
 <http://purl.obolibrary.org/obo/GO_0160195> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/negative_regulation.yaml> .
 
 
+<http://purl.obolibrary.org/obo/GO_0160199> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/positive_regulation.yaml> .
+
+
 <http://purl.obolibrary.org/obo/GO_0170033> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/metabolic_process.yaml> .
Original file line number	Diff line number	Diff line change
Expand Up		@@ -29,7 +29,7 @@ TODO

		## Equivalent to

		[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991) and ([capable_of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`)
		[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`)



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Original file line number	Diff line number	Diff line change
Expand Up		@@ -39312,6 +39312,9 @@
		<http://purl.obolibrary.org/obo/GO_0160195> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/negative_regulation.yaml> .


		<http://purl.obolibrary.org/obo/GO_0160199> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/positive_regulation.yaml> .


		<http://purl.obolibrary.org/obo/GO_0170033> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/metabolic_process.yaml> .


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