Merge pull request #28917 from geneontology/issue-28907

Revised defs; fixes #28907

src/ontology/go-edit.obo

@@ -32997,12 +32997,13 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
 id: GO:0003940
 name: L-iduronidase activity
 namespace: molecular_function
-def: "Catalysis of the hydrolysis of alpha-L-iduronosidic linkages in dermatan sulfate." [EC:3.2.1.76]
+def: "Catalysis of the hydrolysis of alpha-L-iduronosidic linkages in dermatan sulfate. Can also hydrolyze alpha-L-iduronosidic linkages in heparan sulfate." [EC:3.2.1.76, PMID:35011691]
 synonym: "alpha-L-iduronidase activity" RELATED [EC:3.2.1.76]
 synonym: "glycosaminoglycan alpha-L-iduronohydrolase activity" RELATED [EC:3.2.1.76]
 xref: EC:3.2.1.76
 xref: MetaCyc:3.2.1.76-RXN
 is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28907" xsd:anyURI
 
 [Term]
 id: GO:0003941
@@ -34212,7 +34213,7 @@ is_a: GO:0016879 ! ligase activity, forming carbon-nitrogen bonds
 id: GO:0004020
 name: adenylylsulfate kinase activity
 namespace: molecular_function
-def: "Catalysis of the reaction: ATP + adenylylsulfate = ADP + 3'-phosphoadenosine 5'-phosphosulfate." [EC:2.7.1.25]
+def: "Catalysis of the reaction: adenosine 5'-phosphosulfate + ATP = 3'-phosphoadenylyl sulfate + ADP + H+." [EC:2.7.1.25]
 synonym: "5'-phosphoadenosine sulfate kinase activity" RELATED [EC:2.7.1.25]
 synonym: "adenosine 5'-phosphosulfate kinase activity" RELATED [EC:2.7.1.25]
 synonym: "adenosine phosphosulfate kinase activity" RELATED [EC:2.7.1.25]
@@ -34230,6 +34231,7 @@ xref: MetaCyc:ADENYLYLSULFKIN-RXN
 xref: RHEA:24152
 is_a: GO:0016301 ! kinase activity
 is_a: GO:0016773 ! phosphotransferase activity, alcohol group as acceptor
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28907" xsd:anyURI
 
 [Term]
 id: GO:0004021
@@ -45904,7 +45906,7 @@ is_a: GO:0004779 ! sulfate adenylyltransferase activity
 id: GO:0004781
 name: sulfate adenylyltransferase (ATP) activity
 namespace: molecular_function
-def: "Catalysis of the reaction: ATP + sulfate = diphosphate + adenylylsulfate." [EC:2.7.7.4]
+def: "Catalysis of the reaction: ATP + H+ + sulfate = adenosine 5'-phosphosulfate + diphosphate." [EC:2.7.7.4]
 synonym: "adenosine-5'-triphosphate sulfurylase activity" RELATED [EC:2.7.7.4]
 synonym: "adenosinetriphosphate sulfurylase activity" RELATED [EC:2.7.7.4]
 synonym: "adenylylsulfate pyrophosphorylase activity" RELATED [EC:2.7.7.4]
@@ -45918,6 +45920,7 @@ xref: EC:2.7.7.4
 xref: MetaCyc:SULFATE-ADENYLYLTRANS-RXN
 xref: RHEA:18133
 is_a: GO:0004779 ! sulfate adenylyltransferase activity
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28907" xsd:anyURI
 
 [Term]
 id: GO:0004782
@@ -108614,7 +108617,7 @@ is_obsolete: true
 id: GO:0015018
 name: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
 namespace: molecular_function
-def: "Catalysis of the reaction: UDP-glucuronate + 3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein = UDP + 3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein." [EC:2.4.1.135]
+def: "Catalysis of the reaction: 3-O-(beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl)-L-seryl-[protein] + UDP-alpha-D-glucuronate = 3-O-(beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl)-L-seryl-[protein] + H+ + UDP." [EC:2.4.1.135]
 synonym: "glucuronosyltransferase I activity" NARROW [EC:2.4.1.135]
 synonym: "UDP-glucuronate:3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosyl-protein D-glucuronosyltransferase activity" RELATED [EC:2.4.1.135]
 synonym: "UDPglucuronate:3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosyl-protein D-glucuronosyltransferase activity" RELATED [EC:2.4.1.135]
@@ -108623,6 +108626,7 @@ xref: EC:2.4.1.135
 xref: MetaCyc:2.4.1.135-RXN
 xref: RHEA:24168
 is_a: GO:0015020 ! glucuronosyltransferase activity
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28907" xsd:anyURI
 
 [Term]
 id: GO:0015019
@@ -108642,7 +108646,7 @@ id: GO:0015020
 name: glucuronosyltransferase activity
 namespace: molecular_function
 alt_id: GO:0003981
-def: "Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside." [RHEA:21032]
+def: "Catalysis of the reaction: glucuronate acceptor + UDP-alpha-D-glucuronate = acceptor beta-D-glucuronoside + H+ + UDP." [RHEA:21032]
 synonym: "1-naphthol glucuronyltransferase activity" NARROW [EC:2.4.1.17]
 synonym: "1-naphthol-UDP-glucuronosyltransferase activity" NARROW [EC:2.4.1.17]
 synonym: "17-beta-hydroxysteroid UDP-glucuronosyltransferase activity" NARROW [EC:2.4.1.17]
@@ -108704,6 +108708,7 @@ xref: MetaCyc:UDP-GLUCURONOSYLTRANSFERASE-RXN
 xref: RHEA:21032
 is_a: GO:0008194 ! UDP-glycosyltransferase activity
 is_a: GO:0016758 ! hexosyltransferase activity
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28907" xsd:anyURI
 
 [Term]
 id: GO:0015021