Add wildcard to output data element for log.

galaxyproteomics · Jul 6, 2024 · f3870b0 · f3870b0
1 parent f154c6b
commit f3870b0
Show file tree

Hide file tree

Showing 2 changed files with 1 addition and 2 deletions.
diff --git a/tools/fragpipe/fragpipe.xml b/tools/fragpipe/fragpipe.xml
@@ -85,7 +85,7 @@
             <filter>workflow_only or (output_options and 'workflow' in output_options)</filter>
         </data>
         <!-- FragPipe log -->
-        <data name="log" format="txt" label="${tool.name} on ${on_string}: log.txt" from_work_dir="outputs/log.txt">
+        <data name="log" format="txt" label="${tool.name} on ${on_string}: log.txt" from_work_dir="outputs/log_*.txt">
             <filter>not workflow_only and output_options and 'log' in output_options</filter>
         </data>
 

diff --git a/tools/fragpipe/macros.xml b/tools/fragpipe/macros.xml
@@ -100,7 +100,6 @@
     -->
     <token name="@PREPARE_OUTPUTS@"><![CDATA[
         cd outputs &&
-        ln -s log_*.txt log.txt &&
 
         #if $output_options and 'combined_outputs' in $output_options
             mkdir combined_outputs &&