Add script to filter and create tool table for every community

bin/get_community_tools.sh

@@ -0,0 +1,39 @@
+#!/usr/bin/env bash
+
+
+for com_data_fp in data/* ; do
+        if [[ -d "$com_data_fp" && ! -L "$com_data_fp" ]]; then
+                community=`basename "$com_data_fp"`
+
+                echo "$community";
+
+                if [[ "$community" == *"microgalaxy"* ]]; then
+                        curl \
+                                -L \
+                                "https://docs.google.com/spreadsheets/d/1Nq_g-CPc8t_eC4M1NAS9XFJDflA7yE3b9hfSg3zu9L4/export?format=tsv&gid=1533244711" \
+                                -o "data/$community/tools_to_keep"
+
+                        curl \
+                                -L \
+                                "https://docs.google.com/spreadsheets/d/1Nq_g-CPc8t_eC4M1NAS9XFJDflA7yE3b9hfSg3zu9L4/export?format=tsv&gid=672552331" \
+                                -o "data/$community/tools_to_exclude"
+                fi;
+
+
+                mkdir -p "results/$community"
+
+                python bin/extract_galaxy_tools.py \
+                        filtertools \
+                        --tools "results/all_tools.tsv" \
+                        --filtered_tools "results/$community/tools.tsv" \
+                        --categories "data/$community/categories" \
+                        --exclude "data/$community/tools_to_exclude" \
+                        --keep "data/$community/tools_to_keep"
+
+                python bin/create_interactive_table.py \
+                        --table "results/$community/tools.tsv" \
+                        --template "data/interactive_table_template.html" \
+                        --output "results/$community/index.html"
+
+  fi;
+done