Reword genome>data

galaxyproject · Sep 5, 2024 · cd006e3 · cd006e3
1 parent c1372f4
commit cd006e3
Showing 1 changed file with 67 additions and 63 deletions.
diff --git a/subdomains/genome/data.yml b/subdomains/genome/data.yml
@@ -1,6 +1,73 @@
 id: data
 title: Data import and preparation
 tabs:
+  - id: help
+    title: Overview
+    content:
+    header_md: >
+      If you are new to galaxy, uploading your data is a good place to start!
+      <br>
+      Check out the Tools and Workflows tabs for different approaches to uploading data.
+     - title_md: How can I import my genomics data?
+        description_md: >
+          <p>
+            You can upload your data to Galaxy using the Upload tool from anywhere in Galaxy. Just look for the "Upload data" button at the top of the tool panel.
+          </p>
+        button_md: More info
+        button_link: https://training.galaxyproject.org/training-material/topics/galaxy-interface/
+      - title_md: How can I subsample my data?
+        description_md: >
+          <p>
+            We recommend subsampling large data sets to test tools and workflows. A useful tool is <code>seqtk_seq</code>, setting the parameter at "Sample fraction of sequences".
+          </p>
+      - title_md: How can I import data from the BPA portal?
+        description_md: >
+          <p>
+            BioPlatforms Australia allows data downloads via URL. Once you have generated one of these URLs in the BPA portal, you can import it into Galaxy using the "Fetch data" feature of the Upload tool.
+          </p>
+        button_md: More info
+        button_link: https://australianbiocommons.github.io/how-to-guides/genome_assembly/hifi_assembly#in-depth-workflow-guide
+      - title_md: Can I upload sensitive data?
+        description_md: >
+          <p>
+            No, do not upload personal or sensitive, such as human health or clinical data. Please see our <a href="/about#data-privacy">Data Privacy</a> page for definitions of sensitive and health-related information.
+          </p>
+          <p>
+            Please also make sure you have read our <a href="/about#terms-of-service">Terms of Service</a>, which covers hosting and analysis of research data.
+          </p>
+      - title_md: Is my data private?
+        description_md: >
+          <p>
+            Please read our <a href="/about#data-privacy">Privacy Policy</a> for information on your personal data and any data that you upload.
+          </p>
+      - title_md: How can I increase my storage quota?
+        description_md: >
+          <p>
+            Please submit a quota request if your Galaxy Australia account reaches its data storage limit. Requests are usually provisioned quickly if you provide a reasonable use case for your request.
+          </p>
+        button_md: Request
+        button_link: /request/quota
+      - title_md: "Tutorial: Quality Control"
+        description_md: >
+          <p>
+            Quality control and data cleaning is an essential first step in any NGS analysis. This tutorial will show you how to use and interpret results from <code>FastQC</code>, <code>NanoPlot</code> and <code>PycoQC</code>.
+          </p>
+        button_md: Tutorial
+        button_link: https://training.galaxyproject.org/training-material/topics/sequence-analysis/tutorials/quality-control/tutorial.html
+      - title_md: "Tutorial: introduction to Genomics and Galaxy"
+        description_md: >
+          <p>
+            This practical aims to familiarize you with the Galaxy user interface. It will teach you how to perform basic tasks such as importing data, running tools, working with histories, creating workflows, and sharing your work.
+          </p>
+        button_md: Tutorial
+        button_link: https://training.galaxyproject.org/training-material/topics/introduction/tutorials/galaxy-intro-strands/tutorial.html
+      - title_md: Galaxy Australia support
+        description_md: >
+          <p>
+            Any user of Galaxy Australia can request support through an online form.
+          </p>
+        button_md: Request support
+        button_link: /request/support
   - id: tools
     title: Tools
     heading_md: >
@@ -95,66 +162,3 @@ tabs:
         view_link: https://workflowhub.eu/workflows/224
         view_tip: View in WorkflowHub
         button_tip: Import to Galaxy AU
-  - id: help
-    title: Help
-    content:
-      - title_md: How can I import my genomics data?
-        description_md: >
-          <p>
-            You can upload your data to Galaxy using the Upload tool from anywhere in Galaxy. Just look for the "Upload data" button at the top of the tool panel.
-          </p>
-        button_md: More info
-        button_link: https://training.galaxyproject.org/training-material/topics/galaxy-interface/
-      - title_md: How can I subsample my data?
-        description_md: >
-          <p>
-            We recommend subsampling large data sets to test tools and workflows. A useful tool is <code>seqtk_seq</code>, setting the parameter at "Sample fraction of sequences".
-          </p>
-      - title_md: How can I import data from the BPA portal?
-        description_md: >
-          <p>
-            BioPlatforms Australia allows data downloads via URL. Once you have generated one of these URLs in the BPA portal, you can import it into Galaxy using the "Fetch data" feature of the Upload tool.
-          </p>
-        button_md: More info
-        button_link: https://australianbiocommons.github.io/how-to-guides/genome_assembly/hifi_assembly#in-depth-workflow-guide
-      - title_md: Can I upload sensitive data?
-        description_md: >
-          <p>
-            No, do not upload personal or sensitive, such as human health or clinical data. Please see our <a href="/about#data-privacy">Data Privacy</a> page for definitions of sensitive and health-related information.
-          </p>
-          <p>
-            Please also make sure you have read our <a href="/about#terms-of-service">Terms of Service</a>, which covers hosting and analysis of research data.
-          </p>
-      - title_md: Is my data private?
-        description_md: >
-          <p>
-            Please read our <a href="/about#data-privacy">Privacy Policy</a> for information on your personal data and any data that you upload.
-          </p>
-      - title_md: How can I increase my storage quota?
-        description_md: >
-          <p>
-            Please submit a quota request if your Galaxy Australia account reaches its data storage limit. Requests are usually provisioned quickly if you provide a reasonable use case for your request.
-          </p>
-        button_md: Request
-        button_link: /request/quota
-      - title_md: "Tutorial: Quality Control"
-        description_md: >
-          <p>
-            Quality control and data cleaning is an essential first step in any NGS analysis. This tutorial will show you how to use and interpret results from <code>FastQC</code>, <code>NanoPlot</code> and <code>PycoQC</code>.
-          </p>
-        button_md: Tutorial
-        button_link: https://training.galaxyproject.org/training-material/topics/sequence-analysis/tutorials/quality-control/tutorial.html
-      - title_md: "Tutorial: introduction to Genomics and Galaxy"
-        description_md: >
-          <p>
-            This practical aims to familiarize you with the Galaxy user interface. It will teach you how to perform basic tasks such as importing data, running tools, working with histories, creating workflows, and sharing your work.
-          </p>
-        button_md: Tutorial
-        button_link: https://training.galaxyproject.org/training-material/topics/introduction/tutorials/galaxy-intro-strands/tutorial.html
-      - title_md: Galaxy Australia support
-        description_md: >
-          <p>
-            Any user of Galaxy Australia can request support through an online form.
-          </p>
-        button_md: Request support
-        button_link: /request/support